Feature ID	Range (original values)	IQR (original values)	Difference (original values)	Fold Change (original values)	Weighted proportions difference	Weighted proportions fold change	Test statistic	P-value	FDR p-value correction	Bonferroni	Target description	GO biological process	Expression values	Gene length	Unique gene reads	Total gene reads	RPKM	Means	Expression values	Gene length	Unique gene reads	Total gene reads	RPKM	Means
ruditapes_lrc29501	3.497	3.497	-3.497	-133.426	-2.50E-06	-132.525	-1.856	0.063	0.605	1	perlucin 6		3.524	653	13	60	3.524	3.524	0.026	653	0	1	0.026	0.026
ruditapes2_lrc6520	3.123	3.123	-3.123	-100.07	-2.23E-06	-99.394	-1.75	0.08	0.703	1	cytochrome c oxidase subunit via polypeptide 1		3.155	547	7	45	3.155	3.155	0.032	547	0	1	0.032	0.032
ruditapes2_c2728	3.215	3.215	-3.215	-67.825	-2.30E-06	-67.367	-1.766	0.077	0.689	1	high mobility group protein b2	/// 0005634 // nucleus /// 0003677 // DNA binding	3.263	717	40	61	3.263	3.263	0.048	717	1	2	0.048	0.048
ruditapes_c2726	543.648	543.648	-543.648	-42.859	-3.89E-04	-42.57	-22.776	8.38E-115	7.19E-112	2.73E-110	rCG56563 [Rattus norvegicus]		556.635	486	696	"7,054"	556.635	556.635	12.988	486	165	366	12.988	12.988
ruditapes_lrc30337	4.715	4.715	-4.715	-40.028	-3.37E-06	-39.758	-2.117	0.034	0.396	1	epididymal secretory protein e1 precursor	/// 0043231 // intracellular membrane-bounded organelle /// 0065007 // biological regulation /// 0005488 // binding /// 0005737 // cytoplasm /// 0009987 // cellular process /// 0006869 // lipid transport	4.836	571	13	72	4.836	4.836	0.121	571	0	4	0.121	0.121
ruditapes_lrc19157	15.345	15.345	-15.345	-36.995	-1.10E-05	-36.746	-3.811	1.38E-04	4.11E-03	1	hypothetical protein ZyciCp074 [Zygnema circumcarinatum]		15.771	445	151	183	15.771	15.771	0.426	445	10	11	0.426	0.426
ruditapes_lrc33484	331.339	331.339	-331.339	-28.591	-2.37E-04	-28.398	-17.571	4.21E-69	2.41E-66	1.37E-64	cg12324 protein	/// 0005811 // lipid particle /// 0000022 // mitotic spindle elongation	343.348	382	207	"3,420"	343.348	343.348	12.009	382	42	266	12.009	12.009
ruditapes2_c693	5.511	5.511	-5.511	-22.844	-3.94E-06	-22.69	-2.246	0.025	0.309	1	prefoldin subunit 1	/// 0003700 // transcription factor activity /// 0016272 // prefoldin complex /// 0005886 // plasma membrane /// 0007049 // cell cycle /// 0051082 // unfolded protein binding /// 0006457 // protein folding	5.763	752	17	113	5.763	5.763	0.252	752	0	11	0.252	0.252
ruditapes_lrc38794	12.941	12.941	-12.941	-21.896	-9.25E-06	-21.748	-3.435	5.94E-04	0.015	1	ribosomal protein s8	/// 0005811 // lipid particle /// 0006412 // translation /// 0003735 // structural constituent of ribosome /// 0022627 // cytosolic small ribosomal subunit	13.56	362	32	128	13.56	13.56	0.619	362	2	13	0.619	0.619
ruditapes2_c2223	10.559	10.559	-10.559	-21.793	-7.55E-06	-21.646	-3.102	1.92E-03	0.04	1	hypothetical protein GZ9E5_47 [uncultured archaeon GZfos9E5]		11.067	849	218	245	11.067	11.067	0.508	849	24	25	0.508	0.508
ruditapes_lrc35717	3.251	3.251	-3.251	-21.602	-2.33E-06	-21.456	-1.72	0.085	0.734	1	nadh: oxidoreductase subunit	/// 0005743 // mitochondrial inner membrane	3.409	765	7	68	3.409	3.409	0.158	765	0	7	0.158	0.158
ruditapes2_lrc5332	23.664	23.664	-23.664	-21.33	-1.69E-05	-21.186	-4.639	3.51E-06	1.49E-04	0.114	atp h+ mitochondrial f0 subunit c (subunit 9)	"/// 0015992 // proton transport /// 0015078 // hydrogen ion transmembrane transporter activity /// 0045263 // proton-transporting ATP synthase complex,  coupling factor F(o)"	24.827	726	9	470	24.827	24.827	1.164	726	1	49	1.164	1.164
ruditapes2_lrc5315	31.27	31.27	-31.27	-20.649	-2.24E-05	-20.51	-5.324	1.02E-07	5.50E-06	3.31E-03	ribosomal protein l32	/// 0006414 // translational elongation /// 0005515 // protein binding /// 0022625 // cytosolic large ribosomal subunit /// 0003735 // structural constituent of ribosome	32.862	531	10	455	32.862	32.862	1.591	531	1	49	1.591	1.591
ruditapes_lrc32779	6.042	6.042	-6.042	-20.014	-4.32E-06	-19.879	-2.337	0.019	0.258	1	mgc89694 protein	/// 0006633 // fatty acid biosynthetic process /// 0000036 // acyl carrier activity /// 0031177 // phosphopantetheine binding /// 0048037 // cofactor binding	6.36	597	0	99	6.36	6.36	0.318	597	0	11	0.318	0.318
ruditapes_c24521	6.348	6.348	-6.348	-16.901	-4.54E-06	-16.787	-2.373	0.018	0.239	1	hypothetical protein CaO19.63 [Candida albicans SC5314]		6.747	432	76	76	6.747	6.747	0.399	432	10	10	0.399	0.399
ruditapes_c9743	94.246	94.246	-94.246	-16.221	-6.74E-05	-16.112	-9.12	7.55E-20	1.27E-17	2.46E-15	zinc finger protein 316		100.438	454	"1,101"	"1,189"	100.438	100.438	6.192	454	156	163	6.192	6.192
ruditapes_lrc32217	67.507	67.507	-67.507	-15.19	-4.83E-05	-15.087	-7.685	1.53E-14	1.73E-12	4.98E-10	atp synthase beta subunit	"/// 0005524 // ATP binding /// 0043499 // eukaryotic cell surface binding /// 0046933 // hydrogen ion transporting ATP synthase activity,  rotational mechanism /// 0001525 // angiogenesis /// 0005886 // plasma membrane /// 0015986 // ATP synthesis coupled proton transport /// 0006629 // lipid metabolic process /// 0005754 // mitochondrial proton-transporting ATP synthase,  catalytic core /// 0006933 // negative regulation of cell adhesion involved in substrate-bound cell migration /// 0046961 // proton-transporting ATPase activity,  rotational mechanism /// 0042645 // mitochondrial nucleoid /// 0009986 // cell surface /// 0051453 // regulation of intracellular pH /// 0042288 // MHC class I protein binding /// 0008553 // hydrogen-exporting ATPase activity,  phosphorylative mechanism"	72.265	899	154	"1,694"	72.265	72.265	4.757	899	23	248	4.757	4.757
ruditapes_c37655	3.252	3.252	-3.252	-14.578	-2.33E-06	-14.48	-1.682	0.093	0.772	1	elastase 2 like		3.492	648	12	59	3.492	3.492	0.24	648	0	9	0.24	0.24
ruditapes2_lrc3698	4.042	4.042	-4.042	-13.76	-2.89E-06	-13.667	-1.867	0.062	0.594	1	lethal neo18		4.359	871	6	99	4.359	4.359	0.317	871	3	16	0.317	0.317
ruditapes_lrc32105	8.525	8.525	-8.525	-12.296	-6.09E-06	-12.213	-2.688	7.19E-03	0.119	1	glutathione s-transferase	/// 0005515 // protein binding	9.279	777	4	188	9.279	9.279	0.755	777	0	34	0.755	0.755
ruditapes_c9628	8.165	8.165	-8.165	-10.995	-5.84E-06	-10.921	-2.605	9.18E-03	0.145	1	orf2-encoded protein		8.982	380	89	89	8.982	8.982	0.817	380	18	18	0.817	0.817
ruditapes_lrc34665	7.726	7.726	-7.726	-10.891	-5.52E-06	-10.817	-2.532	0.011	0.171	1	aplp_locmi ame: full=apolipophorins contains: ame: full=apolipophorin-2 ame: full=apolipophorin ii ame: full=apolp-2 contains: ame: full=apolipophorin-1 ame: full=apolipophorin i ame: full=apolp-1 flags: precursor		8.507	861	3	191	8.507	8.507	0.781	861	0	39	0.781	0.781
ruditapes_c3849	3.542	3.542	-3.542	-10.674	-2.53E-06	-10.602	-1.711	0.087	0.742	1	small nuclear ribonucleoprotein polypeptide f	/// 0030532 // small nuclear ribonucleoprotein complex /// 0005681 // spliceosomal complex /// 0005515 // protein binding /// 0005654 // nucleoplasm /// 0005829 // cytosol /// 0003723 // RNA binding /// 0000387 // spliceosomal snRNP biogenesis	3.908	471	36	48	3.908	3.908	0.366	471	7	10	0.366	0.366
ruditapes_c32686	7.136	7.136	-7.136	-10.625	-5.10E-06	-10.553	-2.428	0.015	0.213	1	egf-like domain-containing protein		7.878	628	113	129	7.878	7.878	0.741	628	13	27	0.741	0.741
ruditapes_lrc33929	"2,362.23"	"2,362.23"	"-2,362.23"	-10.334	-1.69E-03	-10.265	-44.086	0	0	0	ribosomal protein s27a	/// 0031145 // anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process /// 0051436 // negative regulation of ubiquitin-protein ligase activity during mitotic cell cycle /// 0006414 // translational elongation /// 0046872 // metal ion binding /// 0051437 // positive regulation of ubiquitin-protein ligase activity during mitotic cell cycle /// 0005515 // protein binding /// 0005654 // nucleoplasm /// 0030433 // ER-associated protein catabolic process /// 0030528 // transcription regulator activity /// 0016567 // protein ubiquitination /// 0003735 // structural constituent of ribosome /// 0048167 // regulation of synaptic plasticity /// 0022627 // cytosolic small ribosomal subunit /// 0007411 // axon guidance /// 0045941 // positive regulation of transcription /// 0042062 // long-term strengthening of neuromuscular junction	"2,615.29"	540	"9,980"	"36,825"	"2,615.29"	"2,615.29"	253.065	540	"1,192"	"7,924"	253.065	253.065
ruditapes_lrc32392	5.98	5.98	-5.98	-10.146	-4.28E-06	-10.077	-2.212	0.027	0.33	1	protein		6.634	844	19	146	6.634	6.634	0.654	844	2	32	0.654	0.654
ruditapes_c13771	38.056	38.056	-38.056	-10.08	-2.72E-05	-10.012	-5.577	2.45E-08	1.47E-06	7.98E-04	crumbs homolog 1 isoform ii precursor		42.247	502	450	553	42.247	42.247	4.191	502	103	122	4.191	4.191
ruditapes_lrc35406	5.382	5.382	-5.382	-10.007	-3.85E-06	-9.939	-2.096	0.036	0.411	1	cystatin f		5.979	635	21	99	5.979	5.979	0.597	635	4	22	0.597	0.597
ruditapes_lrc33116	38.803	38.803	-38.803	-9.937	-2.77E-05	-9.87	-5.623	1.88E-08	1.15E-06	6.11E-04	ubiquitin-like protein fubi and ribosomal protein s30 precursor	/// 0006414 // translational elongation /// 0005515 // protein binding /// 0003723 // RNA binding /// 0003735 // structural constituent of ribosome /// 0022627 // cytosolic small ribosomal subunit	43.144	568	46	639	43.144	43.144	4.342	568	7	143	4.342	4.342
ruditapes2_c4074	6.987	6.987	-6.987	-9.719	-4.99E-06	-9.653	-2.381	0.017	0.235	1	calcium-binding ef-hand domain protein		7.789	581	25	118	7.789	7.789	0.801	581	2	27	0.801	0.801
ruditapes_c16275	48.131	48.131	-48.131	-9.706	-3.44E-05	-9.641	-6.247	4.17E-10	3.19E-08	1.36E-05	pol-like protein		53.66	496	684	694	53.66	53.66	5.528	496	155	159	5.528	5.528
ruditapes_c16815	3.411	3.411	-3.411	-8.789	-2.44E-06	-8.73	-1.645	0.1	0.806	1	endonuclease reverse transcriptase		3.849	827	83	83	3.849	3.849	0.438	827	21	21	0.438	0.438
ruditapes_lrc32619	4.412	4.412	-4.412	-8.724	-3.15E-06	-8.665	-1.869	0.062	0.593	1	apolipophorin precursor protein		4.983	785	6	102	4.983	4.983	0.571	785	1	26	0.571	0.571
ruditapes2_c7080	5.996	5.996	-5.996	-8.536	-4.29E-06	-8.479	-2.173	0.03	0.358	1	myosin heavy chain	/// 0005524 // ATP binding /// 0032440 // 2-alkenal reductase activity /// 0055114 // oxidation reduction /// 0003774 // motor activity /// 0006941 // striated muscle contraction /// 0051015 // actin filament binding /// 0005863 // striated muscle thick filament	6.791	672	25	119	6.791	6.791	0.796	672	7	31	0.796	0.796
ruditapes_lrc33380	150.216	150.216	-150.216	-8.463	-1.07E-04	-8.406	-10.867	1.66E-27	4.22E-25	5.40E-23	40s ribosomal protein s2	/// 0006414 // translational elongation /// 0005730 // nucleolus /// 0005654 // nucleoplasm /// 0048604 // fibroblast growth factor 3 binding /// 0003735 // structural constituent of ribosome /// 0022627 // cytosolic small ribosomal subunit /// 0048602 // fibroblast growth factor 1 binding	170.345	335	54	"1,488"	170.345	170.345	20.129	335	17	391	20.129	20.129
ruditapes_c2465	109.484	109.484	-109.484	-8.458	-7.82E-05	-8.401	-9.277	1.75E-20	3.10E-18	5.71E-16	major surface protein 1a		124.164	484	895	"1,567"	124.164	124.164	14.68	484	182	412	14.68	14.68
ruditapes2_c432	5.763	5.763	-5.763	-8.277	-4.12E-06	-8.221	-2.123	0.034	0.392	1	tnf superfamily ligand tl1a		6.555	784	74	134	6.555	6.555	0.792	784	21	36	0.792	0.792
ruditapes_lrc8074	102.149	102.149	-102.149	-8.118	-7.30E-05	-8.063	-8.915	4.88E-19	7.54E-17	1.59E-14	ribosomal protein s6	/// 0005840 // ribosome /// 0006412 // translation /// 0003735 // structural constituent of ribosome	116.501	"1,138"	253	"3,457"	116.501	116.501	14.351	"1,138"	116	947	14.351	14.351
ruditapes_c15663	33.257	33.257	-33.257	-8.096	-2.38E-05	-8.041	-5.085	3.68E-07	1.82E-05	0.012	pol-like protein		37.943	471	430	466	37.943	37.943	4.687	471	120	128	4.687	4.687
ruditapes2_c4695	103.185	103.185	-103.185	-8.095	-7.37E-05	-8.04	-8.957	3.34E-19	5.32E-17	1.09E-14	ribosomal protein s6	/// 0005811 // lipid particle /// 0000022 // mitotic spindle elongation /// 0006412 // translation /// 0003735 // structural constituent of ribosome /// 0022627 // cytosolic small ribosomal subunit /// 0006955 // immune response	117.729	702	56	"2,155"	117.729	117.729	14.543	702	20	592	14.543	14.543
ruditapes_c28645	9.349	9.349	-9.349	-8.076	-6.68E-06	-8.021	-2.695	7.04E-03	0.117	1	conserved plasmodium protein		10.67	248	69	69	10.67	10.67	1.321	248	19	19	1.321	1.321
ruditapes_lrc35569	48.34	48.34	-48.34	-8.032	-3.45E-05	-7.978	-6.124	9.10E-10	6.76E-08	2.97E-05	atp synthase beta	"/// 0005524 // ATP binding /// 0005811 // lipid particle /// 0000275 // mitochondrial proton-transporting ATP synthase complex,  catalytic core F(1) /// 0046933 // hydrogen ion transporting ATP synthase activity,  rotational mechanism /// 0015986 // ATP synthesis coupled proton transport /// 0046961 // proton-transporting ATPase activity,  rotational mechanism /// 0008553 // hydrogen-exporting ATPase activity,  phosphorylative mechanism"	55.214	705	49	"1,015"	55.214	55.214	6.874	705	21	281	6.874	6.874
ruditapes_c17607	20.911	20.911	-20.911	-7.988	-1.49E-05	-7.934	-4.025	5.69E-05	1.85E-03	1	scavenger receptor class member 2		23.903	438	214	273	23.903	23.903	2.992	438	59	76	2.992	2.992
ruditapes2_lrc3853	18.85	18.85	-18.85	-7.945	-1.35E-05	-7.892	-3.819	1.34E-04	4.00E-03	1	nadh dehydrogenase 1 alpha subcomplex subunit 5	/// 0040007 // growth /// 0002119 // nematode larval development /// 0009792 // embryonic development ending in birth or egg hatching	21.564	610	147	343	21.564	21.564	2.714	610	27	96	2.714	2.714
ruditapes2_c1916	22.639	22.639	-22.639	-7.937	-1.62E-05	-7.884	-4.185	2.86E-05	9.91E-04	0.931	pol-like protein		25.903	724	488	489	25.903	25.903	3.263	724	137	137	3.263	3.263
ruditapes2_c272	305.651	305.651	-305.651	-7.897	-2.18E-04	-7.844	-15.368	2.71E-53	1.25E-50	8.85E-49	e2f-associated phosphoprotein		349.967	797	"7,273"	"7,273"	349.967	349.967	44.315	797	"2,043"	"2,048"	44.315	44.315
ruditapes_c5274	14.383	14.383	-14.383	-7.872	-1.03E-05	-7.819	-3.332	8.63E-04	0.02	1	orf2-encoded protein		16.476	824	267	354	16.476	16.476	2.093	824	69	100	2.093	2.093
ruditapes_lrc32547	12.271	12.271	-12.271	-7.728	-8.77E-06	-7.676	-3.07	2.14E-03	0.044	1	mitochondrial atp synthase lipid binding protein precursor	"/// 0006811 // ion transport /// 0033177 // proton-transporting two-sector ATPase complex,  proton-transporting domain"	14.095	955	9	351	14.095	14.095	1.824	955	4	101	1.824	1.824
ruditapes_c2264	185.387	185.387	-185.387	-7.717	-1.33E-04	-7.665	-11.931	8.13E-33	2.48E-30	2.65E-28	peptidyl-prolyl cis-trans isomerase	/// 0003755 // peptidyl-prolyl cis-trans isomerase activity /// 0006457 // protein folding	212.987	"1,071"	"2,855"	"5,948"	212.987	212.987	27.6	"1,071"	480	"1,714"	27.6	27.6
ruditapes_c5489	8.445	8.445	-8.445	-7.698	-6.04E-06	-7.646	-2.546	0.011	0.166	1	glutathione s-transferase	/// 0005515 // protein binding	9.706	889	39	225	9.706	9.706	1.261	889	5	65	1.261	1.261
ruditapes_lrc38032	3.487	3.487	-3.487	-7.561	-2.49E-06	-7.51	-1.632	0.103	0.821	1	nucleoside diphosphate kinase b	/// 0005488 // binding /// 0009117 // nucleotide metabolic process	4.018	649	0	68	4.018	4.018	0.531	649	0	20	0.531	0.531
ruditapes_lrc35856	3.743	3.743	-3.743	-7.466	-2.68E-06	-7.415	-1.688	0.091	0.767	1	glutathione s-transferase c		4.322	417	2	47	4.322	4.322	0.579	417	0	14	0.579	0.579
ruditapes_c32582	22.82	22.82	-22.82	-7.46	-1.63E-05	-7.409	-4.167	3.09E-05	1.06E-03	1	ribosomal protein l24	/// 0010458 // exit from mitosis /// 0006414 // translational elongation /// 0021554 // optic nerve development /// 0005515 // protein binding /// 0031575 // G1/S transition checkpoint /// 0022625 // cytosolic large ribosomal subunit /// 0031290 // retinal ganglion cell axon guidance /// 0000027 // ribosomal large subunit assembly /// 0060041 // retina development in camera-type eye /// 0003723 // RNA binding /// 0003735 // structural constituent of ribosome /// 0009790 // embryonic development	26.353	537	0	369	26.353	26.353	3.533	537	0	110	3.533	3.533
ruditapes_lrc33763	"2,109.99"	"2,109.99"	"-2,109.99"	-7.36	-1.51E-03	-7.31	-40.021	0	0	0	ribosomal protein l11	/// 0006414 // translational elongation /// 0006605 // protein targeting /// 0005730 // nucleolus /// 0005515 // protein binding /// 0022625 // cytosolic large ribosomal subunit /// 0019843 // rRNA binding /// 0006364 // rRNA processing /// 0003735 // structural constituent of ribosome /// 0009790 // embryonic development /// 0042273 // ribosomal large subunit biogenesis	"2,441.77"	436	"1,425"	"27,760"	"2,441.77"	"2,441.77"	331.783	436	226	"8,388"	331.783	331.783
ruditapes2_lrc4338	6.659	6.659	-6.659	-7.325	-4.76E-06	-7.276	-2.245	0.025	0.309	1	ribosomal protein l35a	/// 0006414 // translational elongation /// 0005515 // protein binding /// 0005840 // ribosome /// 0006364 // rRNA processing /// 0005829 // cytosol /// 0003735 // structural constituent of ribosome /// 0000049 // tRNA binding /// 0042273 // ribosomal large subunit biogenesis	7.711	557	7	112	7.711	7.711	1.053	557	2	34	1.053	1.053
ruditapes_lrc32357	720.748	720.748	-720.748	-7.264	-5.15E-04	-7.215	-23.335	2.05E-120	1.80E-117	6.67E-116	60s ribosomal protein l13a	/// 0015934 // large ribosomal subunit /// 0006412 // translation /// 0003735 // structural constituent of ribosome	835.816	714	"8,271"	"15,561"	835.816	835.816	115.068	714	"1,204"	"4,764"	115.068	115.068
ruditapes2_lrc5256	17.031	17.031	-17.031	-7.198	-1.22E-05	-7.149	-3.581	3.42E-04	9.06E-03	1	ribosomal protein l21		19.778	477	1	246	19.778	19.778	2.748	477	0	76	2.748	2.748
ruditapes_c2038	4.8	4.8	-4.8	-7.088	-3.43E-06	-7.04	-1.897	0.058	0.569	1	mitochondrial ribosomal protein l17		5.588	700	49	102	5.588	5.588	0.788	700	18	32	0.788	0.788
ruditapes_lrc33842	7.331	7.331	-7.331	-6.977	-5.24E-06	-6.929	-2.339	0.019	0.256	1	ribosomal protein s8	/// 0005840 // ribosome /// 0006412 // translation /// 0003735 // structural constituent of ribosome	8.558	717	16	160	8.558	8.558	1.227	717	4	51	1.227	1.227
ruditapes_c2361	41.233	41.233	-41.233	-6.951	-2.95E-05	-6.904	-5.544	2.95E-08	1.76E-06	9.63E-04	hypothetical protein [Eristalis tenax]		48.163	555	199	697	48.163	48.163	6.929	555	65	223	6.929	6.929
ruditapes_c34318	848.434	848.434	-848.434	-6.937	-6.06E-04	-6.89	-25.149	1.51E-139	1.50E-136	4.94E-135	heat shock protein 70		991.347	645	"7,993"	"16,673"	991.347	991.347	142.912	645	"1,889"	"5,345"	142.912	142.912
ruditapes_lrc35417	4.002	4.002	-4.002	-6.905	-2.86E-06	-6.859	-1.726	0.084	0.729	1	basic transcription factor 3-like 4		4.68	967	0	118	4.68	4.68	0.678	967	0	38	0.678	0.678
ruditapes2_c109	121.441	121.441	-121.441	-6.813	-8.68E-05	-6.767	-9.487	2.39E-21	4.35E-19	7.79E-17	hypothetical protein BRAFLDRAFT_123087 [Branchiostoma floridae]		142.331	672	"2,307"	"2,494"	142.331	142.331	20.89	672	658	814	20.89	20.89
ruditapes_lrc20511	140.355	140.355	-140.355	-6.804	-1.00E-04	-6.758	-10.197	2.06E-24	4.53E-22	6.70E-20	26s proteasome regulatory subunit t3	/// 0005524 // ATP binding /// 0031145 // anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process /// 0051436 // negative regulation of ubiquitin-protein ligase activity during mitotic cell cycle /// 0000502 // proteasome complex /// 0016887 // ATPase activity /// 0005634 // nucleus /// 0051437 // positive regulation of ubiquitin-protein ligase activity during mitotic cell cycle /// 0005515 // protein binding /// 0001824 // blastocyst development /// 0005829 // cytosol	164.536	465	"1,674"	"1,995"	164.536	164.536	24.181	465	511	652	24.181	24.181
ruditapes_lrc38307	62.866	62.866	-62.866	-6.758	-4.49E-05	-6.712	-6.817	9.31E-12	8.16E-10	3.04E-07	AF339450_1hillarin [Hirudo medicinalis]		73.784	447	731	860	73.784	73.784	10.918	447	141	283	10.918	10.918
ruditapes_c6663	69.2	69.2	-69.2	-6.738	-4.94E-05	-6.693	-7.149	8.76E-13	8.57E-11	2.86E-08	60s ribosomal protein l9	/// 0005622 // intracellular	81.26	429	56	909	81.26	81.26	12.06	429	13	300	12.06	12.06
ruditapes_lrc34142	264.114	264.114	-264.114	-6.659	-1.89E-04	-6.614	-13.942	3.56E-44	1.40E-41	1.16E-39	mitochondrial atp synthase gamma-subunit	"/// 0045261 // proton-transporting ATP synthase complex,  catalytic core F(1) /// 0046933 // hydrogen ion transporting ATP synthase activity,  rotational mechanism /// 0015986 // ATP synthesis coupled proton transport /// 0046961 // proton-transporting ATPase activity,  rotational mechanism"	310.786	732	"3,449"	"5,932"	310.786	310.786	46.672	732	954	"1,981"	46.672	46.672
ruditapes_lrc34485	4.26	4.26	-4.26	-6.586	-3.04E-06	-6.541	-1.767	0.077	0.688	1	cg15828 cg15828- partial		5.022	588	1	77	5.022	5.022	0.763	588	0	26	0.763	0.763
ruditapes_c7529	29.289	29.289	-29.289	-6.559	-2.09E-05	-6.515	-4.631	3.63E-06	1.54E-04	0.118	histone 1	/// 0005634 // nucleus /// 0006334 // nucleosome assembly /// 0003677 // DNA binding /// 0000786 // nucleosome	34.558	455	410	410	34.558	34.558	5.268	455	139	139	5.268	5.268
ruditapes_lrc33106	68.869	68.869	-68.869	-6.512	-4.92E-05	-6.468	-7.094	1.31E-12	1.23E-10	4.26E-08	ribosomal protein l18a	/// 0006414 // translational elongation /// 0005515 // protein binding /// 0022625 // cytosolic large ribosomal subunit /// 0003723 // RNA binding /// 0003735 // structural constituent of ribosome	81.363	617	14	"1,309"	81.363	81.363	12.494	617	1	447	12.494	12.494
ruditapes2_c1875	4.848	4.848	-4.848	-6.469	-3.46E-06	-6.425	-1.88	0.06	0.584	1	cytochrome p450	/// 0016491 // oxidoreductase activity /// 0008152 // metabolic process	5.735	428	55	64	5.735	5.735	0.886	428	20	22	0.886	0.886
ruditapes_s37764	3.68	3.68	-3.68	-6.41	-2.63E-06	-6.366	-1.636	0.102	0.816	1	beta-tubulin	/// 0000166 // nucleotide binding /// 0007017 // microtubule-based process	4.36	431	0	49	4.36	4.36	0.68	431	0	17	0.68	0.68
ruditapes2_lrc5091	11.5	11.5	-11.5	-6.344	-8.22E-06	-6.301	-2.886	3.90E-03	0.072	1	nadh dehydrogenase 1 alpha subcomplex subunit 6	"/// 0003954 // NADH dehydrogenase activity /// 0006120 // mitochondrial electron transport,  NADH to ubiquinone /// 0005747 // mitochondrial respiratory chain complex I"	13.651	545	5	194	13.651	13.651	2.152	545	1	68	2.152	2.152
ruditapes_lrc32649	3.876	3.876	-3.876	-6.274	-2.77E-06	-6.232	-1.673	0.094	0.78	1	receptor of activated kinase c 1	/// 0019903 // protein phosphatase binding /// 0005886 // plasma membrane /// 0043025 // cell soma /// 0005737 // cytoplasm /// 0005102 // receptor binding	4.611	657	3	79	4.611	4.611	0.735	657	0	28	0.735	0.735
ruditapes_c21703	27.477	27.477	-27.477	-6.248	-1.96E-05	-6.206	-4.45	8.57E-06	3.36E-04	0.279	PREDICTED: similar to CG13990-PA [Rattus norvegicus]		32.713	415	354	354	32.713	32.713	5.236	415	126	126	5.236	5.236
ruditapes_s38677	16.237	16.237	-16.237	-6.203	-1.16E-05	-6.161	-3.417	6.33E-04	0.015	1	ribosomal protein l32	/// 0005840 // ribosome /// 0006412 // translation /// 0003735 // structural constituent of ribosome	19.358	315	10	159	19.358	19.358	3.121	315	4	57	3.121	3.121
ruditapes2_lrc4165	97.157	97.157	-97.157	-6.187	-6.94E-05	-6.145	-8.355	6.54E-17	8.95E-15	2.13E-12	ribosomal protein l8	/// 0044424 // intracellular part	115.888	871	50	"2,632"	115.888	115.888	18.731	871	19	946	18.731	18.731
ruditapes_lrc31388	7.477	7.477	-7.477	-6.065	-5.34E-06	-6.024	-2.31	0.021	0.271	1	conserved hypothetical protein [Culex quinquefasciatus]		8.953	514	119	120	8.953	8.953	1.476	514	44	44	1.476	1.476
ruditapes2_c1713	32.617	32.617	-32.617	-6.051	-2.33E-05	-6.01	-4.823	1.42E-06	6.44E-05	0.046	loc794406 protein	/// 0005634 // nucleus /// 0006334 // nucleosome assembly /// 0003677 // DNA binding /// 0000786 // nucleosome	39.075	900	917	917	39.075	39.075	6.458	900	337	337	6.458	6.458
ruditapes2_c3229	184.949	184.949	-184.949	-5.991	-1.32E-04	-5.951	-11.465	1.99E-30	5.64E-28	6.48E-26	cyclophilin-type peptidyl-prolyl cis-trans isomerase	/// 0003755 // peptidyl-prolyl cis-trans isomerase activity /// 0006457 // protein folding	222.006	"1,042"	443	"6,032"	222.006	222.006	37.057	"1,042"	184	"2,239"	37.057	37.057
ruditapes2_lrc4701	"1,876.82"	"1,876.82"	"-1,876.82"	-5.979	-1.34E-03	-5.938	-36.532	4.37E-292	6.20E-289	1.43E-287	tubulin beta-2c chain		"2,253.78"	465	"4,529"	"27,327"	"2,253.78"	"2,253.78"	376.959	465	"2,631"	"10,164"	376.959	376.959
ruditapes_lrc27132	4.282	4.282	-4.282	-5.93	-3.06E-06	-5.89	-1.741	0.082	0.713	1	heat shock protein 22 isoform 2		5.15	417	54	56	5.15	5.15	0.868	417	17	21	0.868	0.868
ruditapes_lrc31148	448.53	448.53	-448.53	-5.835	-3.20E-04	-5.795	-17.773	1.17E-70	6.79E-68	3.80E-66	beta 2c	/// 0005488 // binding /// 0009987 // cellular process	541.3	812	"9,552"	"11,461"	541.3	541.3	92.77	812	"2,903"	"4,368"	92.77	92.77
ruditapes2_lrc4170	778.619	778.619	-778.619	-5.825	-5.56E-04	-5.785	-23.412	3.37E-121	3.05E-118	1.10E-116	beta 2c	/// 0005198 // structural molecule activity /// 0051258 // protein polymerization /// 0005525 // GTP binding /// 0003924 // GTPase activity /// 0043234 // protein complex /// 0042267 // natural killer cell mediated cytotoxicity /// 0005874 // microtubule /// 0006928 // cell motion /// 0051082 // unfolded protein binding /// 0042288 // MHC class I protein binding /// 0007018 // microtubule-based movement	940.004	785	"5,631"	"19,241"	940.004	940.004	161.385	785	"2,121"	"7,346"	161.385	161.385
ruditapes_lrc26425	3.882	3.882	-3.882	-5.698	-2.77E-06	-5.66	-1.646	0.1	0.805	1	ependymin related protein-1 precursor		4.708	334	8	41	4.708	4.708	0.826	334	2	16	0.826	0.826
ruditapes_c4257	8.436	8.436	-8.436	-5.69	-6.03E-06	-5.652	-2.426	0.015	0.214	1	copine family protein		10.235	326	6	87	10.235	10.235	1.799	326	1	34	1.799	1.799
ruditapes_lrc35961	30.679	30.679	-30.679	-5.628	-2.19E-05	-5.59	-4.617	3.90E-06	1.64E-04	0.127	ribosomal protein l7a	/// 0042254 // ribosome biogenesis /// 0005840 // ribosome	37.307	588	21	572	37.307	37.307	6.628	588	17	226	6.628	6.628
ruditapes_c21056	"26,019.75"	"26,019.75"	"-26,019.75"	-5.583	-0.019	-5.545	-135.601	0	0	0	cytochrome c subunit ii	/// 0006810 // transport /// 0005507 // copper ion binding /// 0004129 // cytochrome-c oxidase activity /// 0020037 // heme binding /// 0016021 // integral to membrane /// 0005743 // mitochondrial inner membrane /// 0009055 // electron carrier activity /// 0022904 // respiratory electron transport chain	"31,697.62"	193	"132,517"	"159,519"	"31,697.62"	"31,697.62"	"5,677.87"	193	"56,385"	"63,542"	"5,677.87"	"5,677.87"
ruditapes_c3371	15.412	15.412	-15.412	-5.537	-1.10E-05	-5.499	-3.262	1.11E-03	0.025	1	protein	/// 0003755 // peptidyl-prolyl cis-trans isomerase activity /// 0006457 // protein folding	18.809	995	49	488	18.809	18.809	3.397	995	17	196	3.397	3.397
ruditapes_c3095	49.181	49.181	-49.181	-5.537	-3.51E-05	-5.5	-5.828	5.62E-09	3.75E-07	1.83E-04	SclB protein [Capnocytophaga gingivalis ATCC 33624]		60.022	945	"1,470"	"1,479"	60.022	60.022	10.84	945	581	594	10.84	10.84
ruditapes_lrc38397	4.932	4.932	-4.932	-5.478	-3.52E-06	-5.441	-1.842	0.066	0.617	1	DEC-3 [Lymnaea stagnalis]		6.033	642	68	101	6.033	6.033	1.101	642	29	41	1.101	1.101
ruditapes2_c3534	396.16	396.16	-396.16	-5.417	-2.83E-04	-5.381	-16.473	5.79E-61	2.95E-58	1.89E-56	phosphatase 2a inhibitor i2pp2a	/// 0044424 // intracellular part	485.844	"1,083"	"3,368"	"13,720"	485.844	485.844	89.684	"1,083"	"1,222"	"5,632"	89.684	89.684
ruditapes_c6682	11.498	11.498	-11.498	-5.416	-8.21E-06	-5.38	-2.806	5.02E-03	0.088	1	predicted protein [Nematostella vectensis]		14.102	669	120	246	14.102	14.102	2.604	669	70	101	2.604	2.604
ruditapes_lrc34445	3.972	3.972	-3.972	-5.408	-2.84E-06	-5.371	-1.649	0.099	0.802	1	nucleoside diphosphate kinase variant 1	/// 0005488 // binding /// 0009117 // nucleotide metabolic process	4.874	842	42	107	4.874	4.874	0.901	842	3	44	0.901	0.901
ruditapes2_lrc4584	23.069	23.069	-23.069	-5.355	-1.65E-05	-5.319	-3.966	7.32E-05	2.33E-03	1	predicted protein [Nematostella vectensis]		28.367	726	106	537	28.367	28.367	5.297	726	53	223	5.297	5.297
ruditapes_c32846	9.842	9.842	-9.842	-5.329	-7.03E-06	-5.293	-2.588	9.66E-03	0.151	1	beta-ig-h3 fasciclin		12.116	402	9	127	12.116	12.116	2.274	402	8	53	2.274	2.274
ruditapes_c2307	28.068	28.068	-28.068	-5.319	-2.01E-05	-5.283	-4.368	1.25E-05	4.72E-04	0.408	small nuclear ribonucleoprotein sm d3	/// 0007417 // central nervous system development /// 0030532 // small nuclear ribonucleoprotein complex /// 0005681 // spliceosomal complex /// 0048542 // lymph gland development /// 0005730 // nucleolus /// 0005515 // protein binding /// 0005654 // nucleoplasm /// 0003676 // nucleic acid binding /// 0007422 // peripheral nervous system development /// 0005829 // cytosol /// 0030182 // neuron differentiation /// 0007517 // muscle organ development /// 0000387 // spliceosomal snRNP biogenesis /// 0007052 // mitotic spindle organization	34.566	"1,510"	978	"1,361"	34.566	34.566	6.499	"1,510"	398	569	6.499	6.499
ruditapes_c36522	4.899	4.899	-4.899	-5.295	-3.50E-06	-5.259	-1.823	0.068	0.634	1	mitochondrial ribosomal protein l11	/// 0005622 // intracellular	6.039	635	51	100	6.039	6.039	1.141	635	24	42	1.141	1.141
ruditapes_lrc32142	12.334	12.334	-12.334	-5.284	-8.81E-06	-5.249	-2.892	3.83E-03	0.071	1	transport protein sec61 subunit gamma	/// 0015450 // P-P-bond-hydrolysis-driven protein transmembrane transporter activity /// 0006886 // intracellular protein transport /// 0030176 // integral to endoplasmic reticulum membrane	15.213	605	39	240	15.213	15.213	2.879	605	14	101	2.879	2.879
ruditapes_c9736	28.551	28.551	-28.551	-5.177	-2.04E-05	-5.142	-4.382	1.18E-05	4.46E-04	0.383	ependymin related protein 1		35.386	815	752	752	35.386	35.386	6.835	815	323	323	6.835	6.835
ruditapes_c4080	14.738	14.738	-14.738	-5.164	-1.05E-05	-5.129	-3.147	1.65E-03	0.035	1	hypothetical protein NEMVEDRAFT_v1g145479 [Nematostella vectensis]		18.277	726	136	346	18.277	18.277	3.539	726	76	149	3.539	3.539
ruditapes_lrc38595	95.643	95.643	-95.643	-5.121	-6.83E-05	-5.086	-8.003	1.22E-15	1.49E-13	3.98E-11	ribosomal protein s16	/// 0044424 // intracellular part	118.853	454	5	"1,407"	118.853	118.853	23.21	454	0	611	23.21	23.21
ruditapes_lrc21475	19.313	19.313	-19.313	-5.109	-1.38E-05	-5.074	-3.594	3.25E-04	8.70E-03	1	ribosomal protein s4	/// 0003729 // mRNA binding /// 0022625 // cytosolic large ribosomal subunit /// 0019843 // rRNA binding /// 0030528 // transcription regulator activity /// 0000022 // mitotic spindle elongation /// 0006412 // translation /// 0003735 // structural constituent of ribosome	24.013	543	16	340	24.013	24.013	4.7	543	8	148	4.7	4.7
ruditapes2_c1764	23.882	23.882	-23.882	-5.094	-1.71E-05	-5.06	-3.994	6.49E-05	2.09E-03	1	mitochondrial ribosomal protein s15	"/// 0044403 // symbiosis,  encompassing mutualism through parasitism"	29.715	"1,017"	788	788	29.715	29.715	5.833	"1,017"	343	344	5.833	5.833
ruditapes_c24070	7.393	7.393	-7.393	-5.093	-5.28E-06	-5.059	-2.222	0.026	0.324	1	protein		9.199	296	71	71	9.199	9.199	1.806	296	31	31	1.806	1.806
ruditapes2_c16	42.442	42.442	-42.442	-5.068	-3.03E-05	-5.034	-5.319	1.04E-07	5.63E-06	3.40E-03	cg8844	/// 0055114 // oxidation reduction /// 0005739 // mitochondrion /// 0016020 // membrane /// 0016491 // oxidoreductase activity	52.876	800	785	"1,103"	52.876	52.876	10.434	800	266	484	10.434	10.434
ruditapes2_lrc5593	7.263	7.263	-7.263	-5.021	-5.19E-06	-4.988	-2.196	0.028	0.342	1	nadh dehydrogenase 1 alpha subcomplex subunit 5	/// 0040007 // growth /// 0002119 // nematode larval development /// 0009792 // embryonic development ending in birth or egg hatching	9.069	592	71	140	9.069	9.069	1.806	592	26	62	1.806	1.806
ruditapes_lrc33070	14.958	14.958	-14.958	-4.993	-1.07E-05	-4.959	-3.148	1.64E-03	0.035	1	predicted protein [Nematostella vectensis]		18.704	732	57	357	18.704	18.704	3.746	732	36	159	3.746	3.746
ruditapes_lrc24298	49.156	49.156	-49.156	-4.929	-3.51E-05	-4.896	-5.691	1.26E-08	7.99E-07	4.11E-04	large subunit ribosomal protein 27a	/// 0005840 // ribosome /// 0006412 // translation /// 0003735 // structural constituent of ribosome	61.666	528	90	849	61.666	61.666	12.51	528	56	383	12.51	12.51
ruditapes_c7895	10.163	10.163	-10.163	-4.914	-7.26E-06	-4.881	-2.586	9.71E-03	0.151	1	coiled-coil domain containing 86		12.76	538	179	179	12.76	12.76	2.596	538	81	81	2.596	2.596
ruditapes2_lrc4160	14.37	14.37	-14.37	-4.908	-1.03E-05	-4.874	-3.074	2.11E-03	0.043	1	glutathione s-transferase	/// 0005515 // protein binding	18.047	680	3	320	18.047	18.047	3.677	680	1	145	3.677	3.677
ruditapes2_c439	222.058	222.058	-222.058	-4.905	-1.59E-04	-4.872	-12.084	1.29E-33	4.04E-31	4.20E-29	dynein light chain cytoplasmic	"/// 0005868 // cytoplasmic dynein complex /// 0007290 // spermatid nucleus elongation /// 0042623 // ATPase activity,  coupled /// 0007476 // imaginal disc-derived wing morphogenesis /// 0016459 // myosin complex /// 0051017 // actin filament bundle formation /// 0005634 // nucleus /// 0043186 // P granule /// 0008407 // bristle morphogenesis /// 0005886 // plasma membrane /// 0008039 // synaptic target recognition /// 0007291 // sperm individualization /// 0005829 // cytosol /// 0005874 // microtubule /// 0008092 // cytoskeletal protein binding /// 0003777 // microtubule motor activity /// 0045505 // dynein intermediate chain binding /// 0042803 // protein homodimerization activity /// 0007018 // microtubule-based movement"	278.929	897	"6,393"	"6,524"	278.929	278.929	56.871	897	"2,714"	"2,958"	56.871	56.871
ruditapes_c21651	5.343	5.343	-5.343	-4.868	-3.82E-06	-4.835	-1.871	0.061	0.591	1	apical endosomal glycoprotein		6.724	462	80	81	6.724	6.724	1.381	462	37	37	1.381	1.381
ruditapes2_lrc4716	5.681	5.681	-5.681	-4.861	-4.06E-06	-4.828	-1.929	0.054	0.542	1	loc567151 protein	/// 0032403 // protein complex binding /// 0043234 // protein complex /// 0006412 // translation /// 0005829 // cytosol /// 0005792 // microsome	7.153	504	9	94	7.153	7.153	1.471	504	2	43	1.471	1.471
ruditapes2_lrc4862	48.044	48.044	-48.044	-4.835	-3.43E-05	-4.802	-5.603	2.11E-08	1.28E-06	6.88E-04	aplp_locmi ame: full=apolipophorins contains: ame: full=apolipophorin-2 ame: full=apolipophorin ii ame: full=apolp-2 contains: ame: full=apolipophorin-1 ame: full=apolipophorin i ame: full=apolp-1 flags: precursor		60.573	925	62	"1,461"	60.573	60.573	12.529	925	33	672	12.529	12.529
ruditapes_c10084	149.146	149.146	-149.146	-4.741	-1.07E-04	-4.709	-9.83	8.41E-23	1.67E-20	2.74E-18	camp response element-binding protein 5		189.009	671	"3,295"	"3,307"	189.009	189.009	39.863	671	"1,517"	"1,551"	39.863	39.863
ruditapes_lrc38271	47.939	47.939	-47.939	-4.734	-3.42E-05	-4.702	-5.571	2.54E-08	1.52E-06	8.28E-04	cg15828 cg15828- partial		60.779	501	73	794	60.779	60.779	12.84	501	37	373	12.84	12.84
ruditapes2_lrc4908	9.65	9.65	-9.65	-4.726	-6.89E-06	-4.694	-2.498	0.012	0.182	1	cyclophilin-type peptidyl-prolyl cis-trans isomerase		12.24	"1,012"	33	323	12.24	12.24	2.59	"1,012"	15	152	2.59	2.59
ruditapes_c27614	8.698	8.698	-8.698	-4.726	-6.21E-06	-4.694	-2.372	0.018	0.239	1	scavenger receptor cysteine-rich protein		11.033	650	145	187	11.033	11.033	2.335	650	81	88	2.335	2.335
ruditapes2_lrc4792	381.089	381.089	-381.089	-4.723	-2.72E-04	-4.691	-15.7	1.52E-55	7.20E-53	4.97E-51	translationally controlled tumor protein		483.453	683	176	"8,610"	483.453	483.453	102.363	683	264	"4,054"	102.363	102.363
ruditapes_lrc34670	259.37	259.37	-259.37	-4.705	-1.85E-04	-4.673	-12.94	2.68E-38	9.38E-36	8.72E-34	ribosomal protein s6	/// 0005811 // lipid particle /// 0005840 // ribosome /// 0000022 // mitotic spindle elongation /// 0006412 // translation /// 0003735 // structural constituent of ribosome	329.383	586	121	"5,033"	329.383	329.383	70.013	586	80	"2,379"	70.013	70.013
ruditapes2_lrc3426	5.11	5.11	-5.11	-4.704	-3.65E-06	-4.672	-1.816	0.069	0.641	1	mitochondrial ubiquinol-cytochrome c reductase hinge protein	"/// 0006122 // mitochondrial electron transport,  ubiquinol to cytochrome c /// 0005750 // mitochondrial respiratory chain complex III /// 0008121 // ubiquinol-cytochrome-c reductase activity"	6.49	650	14	110	6.49	6.49	1.38	650	11	52	1.38	1.38
ruditapes2_c5101	6.857	6.857	-6.857	-4.7	-4.90E-06	-4.668	-2.103	0.035	0.406	1	heavy polypeptide non-muscle	/// 0007409 // axonogenesis /// 0006810 // transport /// 0003774 // motor activity /// 0032559 // adenyl ribonucleotide binding /// 0015629 // actin cytoskeleton /// 0043005 // neuron projection /// 0030239 // myofibril assembly /// 0003779 // actin binding /// 0021591 // ventricular system development /// 0051649 // establishment of localization in cell /// 0005737 // cytoplasm /// 0055013 // cardiac muscle cell development /// 0030902 // hindbrain development /// 0007507 // heart development /// 0044430 // cytoskeletal part /// 0016477 // cell migration	8.71	819	18	186	8.71	8.71	1.853	819	10	88	1.853	1.853
ruditapes_c12803	556.925	556.925	-556.925	-4.654	-3.98E-04	-4.623	-18.918	8.25E-80	5.17E-77	2.69E-75	alpha 3d	/// 0005929 // cilium /// 0005932 // microtubule basal body /// 0005198 // structural molecule activity /// 0051258 // protein polymerization /// 0005525 // GTP binding /// 0003924 // GTPase activity /// 0005515 // protein binding /// 0043234 // protein complex /// 0005874 // microtubule /// 0007018 // microtubule-based movement	709.327	847	"10,830"	"15,666"	709.327	709.327	152.402	847	"6,079"	"7,485"	152.402	152.402
ruditapes_c38754	4.281	4.281	-4.281	-4.619	-3.06E-06	-4.587	-1.655	0.098	0.796	1	endo- -beta-glucanase	"/// 0000272 // polysaccharide catabolic process /// 0016798 // hydrolase activity,  acting on glycosyl bonds"	5.464	379	35	54	5.464	5.464	1.183	379	17	26	1.183	1.183
ruditapes_lrc34608	30.599	30.599	-30.599	-4.608	-2.19E-05	-4.577	-4.423	9.72E-06	3.77E-04	0.317	s-adenosylhomocysteine hydrolase	/// 0004013 // adenosylhomocysteinase activity /// 0005488 // binding /// 0006730 // one-carbon metabolic process	39.08	789	194	804	39.08	39.08	8.481	789	32	388	8.481	8.481
ruditapes2_c3356	48.996	48.996	-48.996	-4.606	-3.50E-05	-4.575	-5.597	2.19E-08	1.32E-06	7.13E-04	protein	/// 0005515 // protein binding	62.583	891	151	"1,454"	62.583	62.583	13.588	891	74	702	13.588	13.588
ruditapes2_c3354	26.883	26.883	-26.883	-4.597	-1.92E-05	-4.566	-4.144	3.42E-05	1.16E-03	1	tubulin polymerization-promoting protein family member 3		34.357	"1,066"	164	955	34.357	34.357	7.474	"1,066"	82	462	7.474	7.474
ruditapes_lrc34369	5.734	5.734	-5.734	-4.593	-4.09E-06	-4.562	-1.913	0.056	0.556	1	ribosomal protein l27	/// 0006414 // translational elongation /// 0005840 // ribosome /// 0005829 // cytosol /// 0003735 // structural constituent of ribosome	7.331	497	0	95	7.331	7.331	1.596	497	0	46	1.596	1.596
ruditapes_lrc33987	10.927	10.927	-10.927	-4.554	-7.80E-06	-4.523	-2.636	8.39E-03	0.135	1	alpha 3 type vi collagen isoform 1 precursor		14.001	819	109	299	14.001	14.001	3.074	819	22	146	3.074	3.074
ruditapes_lrc32391	14.51	14.51	-14.51	-4.532	-1.04E-05	-4.502	-3.034	2.41E-03	0.048	1	ribosomal protein s11	/// 0005840 // ribosome /// 0019843 // rRNA binding /// 0006412 // translation /// 0003735 // structural constituent of ribosome	18.617	550	0	267	18.617	18.617	4.108	550	0	131	4.108	4.108
ruditapes2_lrc4749	4.887	4.887	-4.887	-4.527	-3.49E-06	-4.496	-1.76	0.078	0.693	1	ribosomal protein s5	/// 0006414 // translational elongation /// 0006413 // translational initiation /// 0003729 // mRNA binding /// 0006450 // regulation of translational fidelity /// 0003735 // structural constituent of ribosome /// 0022627 // cytosolic small ribosomal subunit	6.273	697	0	114	6.273	6.273	1.386	697	0	56	1.386	1.386
ruditapes2_c41	5.214	5.214	-5.214	-4.488	-3.72E-06	-4.458	-1.815	0.07	0.643	1	selenium-dependent glutathione peroxidase	/// 0006749 // glutathione metabolic process /// 0005625 // soluble fraction /// 0042744 // hydrogen peroxide catabolic process /// 0008430 // selenium binding /// 0004602 // glutathione peroxidase activity /// 0043295 // glutathione binding	6.709	"1,269"	219	222	6.709	6.709	1.495	"1,269"	87	110	1.495	1.495
ruditapes_c26041	8.811	8.811	-8.811	-4.487	-6.29E-06	-4.456	-2.359	0.018	0.246	1	trna (guanine-n7-)-methyltransferase	/// 0006400 // tRNA modification /// 0008176 // tRNA (guanine-N7-)-methyltransferase activity /// 0009792 // embryonic development ending in birth or egg hatching	11.338	389	115	115	11.338	11.338	2.527	389	57	57	2.527	2.527
ruditapes_lrc32467	109.425	109.425	-109.425	-4.478	-7.81E-05	-4.447	-8.309	9.69E-17	1.30E-14	3.16E-12	ribosomal protein l11	/// 0006414 // translational elongation /// 0006605 // protein targeting /// 0005730 // nucleolus /// 0005515 // protein binding /// 0022625 // cytosolic large ribosomal subunit /// 0019843 // rRNA binding /// 0006364 // rRNA processing /// 0003735 // structural constituent of ribosome /// 0009790 // embryonic development /// 0042273 // ribosomal large subunit biogenesis	140.891	610	112	"2,241"	140.891	140.891	31.466	610	31	"1,113"	31.466	31.466
ruditapes_c17941	29.201	29.201	-29.201	-4.467	-2.09E-05	-4.437	-4.289	1.79E-05	6.48E-04	0.584	l _3	/// 0044238 // primary metabolic process /// 0034960 // cellular biopolymer metabolic process	37.624	475	465	466	37.624	37.624	8.423	475	232	232	8.423	8.423
ruditapes_s39701	47.05	47.05	-47.05	-4.448	-3.36E-05	-4.418	-5.439	5.35E-08	3.01E-06	1.75E-03	eukaryotic translation initiation factor		60.697	393	342	622	60.697	60.697	13.647	393	151	311	13.647	13.647
ruditapes_c670	10.72	10.72	-10.72	-4.425	-7.65E-06	-4.395	-2.593	9.51E-03	0.149	1	calmodulin	/// 0019904 // protein domain specific binding /// 0031997 // N-terminal myristoylation domain binding /// 0005886 // plasma membrane /// 0005876 // spindle microtubule /// 0031432 // titin binding /// 0000922 // spindle pole /// 0005829 // cytosol /// 0051592 // response to calcium ion /// 0007049 // cell cycle /// 0005813 // centrosome /// 0007186 // G-protein coupled receptor protein signaling pathway /// 0005509 // calcium ion binding /// 0032465 // regulation of cytokinesis	13.85	"1,091"	93	394	13.85	13.85	3.13	"1,091"	38	198	3.13	3.13
ruditapes_c35878	6.132	6.132	-6.132	-4.419	-4.38E-06	-4.389	-1.961	0.05	0.513	1	proteasome ( macropain) 26s 1	/// 0005634 // nucleus /// 0005488 // binding /// 0030163 // protein catabolic process /// 0051439 // regulation of ubiquitin-protein ligase activity during mitotic cell cycle /// 0016787 // hydrolase activity	7.926	750	55	155	7.926	7.926	1.794	750	19	78	1.794	1.794
ruditapes_c8518	11.743	11.743	-11.743	-4.386	-8.38E-06	-4.356	-2.708	6.77E-03	0.113	1	glucosidase 2 subunit beta		15.212	716	278	284	15.212	15.212	3.468	716	139	144	3.468	3.468
ruditapes_c32371	4.379	4.379	-4.379	-4.371	-3.13E-06	-4.341	-1.652	0.098	0.799	1	eukaryotic translation initiation factor subunit h		5.678	"1,155"	10	171	5.678	5.678	1.299	"1,155"	5	87	1.299	1.299
ruditapes2_c568	7.655	7.655	-7.655	-4.349	-5.46E-06	-4.319	-2.182	0.029	0.352	1	protein		9.941	679	20	176	9.941	9.941	2.286	679	5	90	2.286	2.286
ruditapes_lrc32238	17.615	17.615	-17.615	-4.337	-1.26E-05	-4.308	-3.308	9.41E-04	0.022	1	ependymin precursor		22.893	722	157	431	22.893	22.893	5.279	722	44	221	5.279	5.279
ruditapes_lrc35225	33.228	33.228	-33.228	-4.337	-2.37E-05	-4.308	-4.543	5.54E-06	2.25E-04	0.181	ribosomal protein l4	/// 0006414 // translational elongation /// 0005515 // protein binding /// 0005840 // ribosome /// 0005829 // cytosol /// 0003735 // structural constituent of ribosome	43.186	698	63	786	43.186	43.186	9.957	698	32	403	9.957	9.957
ruditapes_lrc35995	5.764	5.764	-5.764	-4.289	-4.12E-06	-4.26	-1.887	0.059	0.58	1	nadh dehydrogenase 1 beta 8kda		7.517	551	11	108	7.517	7.517	1.753	551	12	56	1.753	1.753
ruditapes2_lrc5221	42.642	42.642	-42.642	-4.28	-3.04E-05	-4.251	-5.13	2.91E-07	1.46E-05	9.47E-03	ppia protein	/// 0003755 // peptidyl-prolyl cis-trans isomerase activity /// 0006457 // protein folding	55.644	703	116	"1,020"	55.644	55.644	13.002	703	46	530	13.002	13.002
ruditapes_lrc34973	14.828	14.828	-14.828	-4.269	-1.06E-05	-4.24	-3.023	2.50E-03	0.05	1	elongation factor 1-beta	/// 0006414 // translational elongation /// 0005853 // eukaryotic translation elongation factor 1 complex /// 0003746 // translation elongation factor activity	19.364	711	13	359	19.364	19.364	4.536	711	7	187	4.536	4.536
ruditapes_c2045	15.097	15.097	-15.097	-4.267	-1.08E-05	-4.238	-3.05	2.29E-03	0.046	1	aldehyde dehydrogenase 1a3	/// 0002072 // optic cup morphogenesis involved in camera-type eye development /// 0043065 // positive regulation of apoptosis /// 0042573 // retinoic acid metabolic process /// 0021768 // nucleus accumbens development /// 0048048 // embryonic eye morphogenesis /// 0004030 // aldehyde dehydrogenase [NAD(P)+] activity /// 0060166 // olfactory pit development	19.718	918	365	472	19.718	19.718	4.621	918	177	246	4.621	4.621
ruditapes_lrc33849	21.263	21.263	-21.263	-4.248	-1.52E-05	-4.219	-3.615	3.00E-04	8.11E-03	1	h+ transporting f1 atp synthase epsilon subunit	"/// 0000275 // mitochondrial proton-transporting ATP synthase complex,  catalytic core F(1) /// 0046933 // hydrogen ion transporting ATP synthase activity,  rotational mechanism /// 0015986 // ATP synthesis coupled proton transport /// 0046961 // proton-transporting ATPase activity,  rotational mechanism"	27.809	382	9	277	27.809	27.809	6.546	382	8	145	6.546	6.546
ruditapes_lrc33941	8.997	8.997	-8.997	-4.245	-6.42E-06	-4.217	-2.351	0.019	0.25	1	ribosomal protein l27	/// 0006414 // translational elongation /// 0005840 // ribosome /// 0005829 // cytosol /// 0003735 // structural constituent of ribosome	11.769	479	8	147	11.769	11.769	2.772	479	4	77	2.772	2.772
ruditapes_lrc25342	551.992	551.992	-551.992	-4.235	-3.94E-04	-4.206	-18.41	1.11E-75	6.83E-73	3.62E-71	ribosomal protein s7	/// 0006414 // translational elongation /// 0005730 // nucleolus /// 0005515 // protein binding /// 0042274 // ribosomal small subunit biogenesis /// 0006364 // rRNA processing /// 0003723 // RNA binding /// 0003735 // structural constituent of ribosome /// 0022627 // cytosolic small ribosomal subunit	722.647	287	396	"5,408"	722.647	722.647	170.655	287	183	"2,840"	170.655	170.655
ruditapes2_c1683	104.272	104.272	-104.272	-4.23	-7.44E-05	-4.201	-7.998	1.27E-15	1.55E-13	4.13E-11	thermoresistant gluconokinase family protein		136.555	453	"1,401"	"1,613"	136.555	136.555	32.283	453	744	848	32.283	32.283
ruditapes_c3528	21.015	21.015	-21.015	-4.229	-1.50E-05	-4.2	-3.59	3.31E-04	8.80E-03	1	cytochrome c oxidase subunit viic		27.523	673	268	483	27.523	27.523	6.509	673	77	254	6.509	6.509
ruditapes_lrc34074	474.893	474.893	-474.893	-4.226	-3.39E-04	-4.198	-17.067	2.65E-65	1.44E-62	8.64E-61	ribosomal protein l18a	/// 0006414 // translational elongation /// 0005515 // protein binding /// 0022625 // cytosolic large ribosomal subunit /// 0003723 // RNA binding /// 0003735 // structural constituent of ribosome	622.09	624	783	"10,122"	622.09	622.09	147.197	624	315	"5,326"	147.197	147.197
ruditapes_lrc33417	78.424	78.424	-78.424	-4.177	-5.60E-05	-4.149	-6.914	4.72E-12	4.26E-10	1.54E-07	guanine nucleotide binding protein (g protein) beta polypeptide 2-like 1	/// 0019903 // protein phosphatase binding /// 0005886 // plasma membrane /// 0043025 // cell soma /// 0005737 // cytoplasm /// 0005102 // receptor binding /// 0007165 // signal transduction	103.109	"1,034"	330	"2,780"	103.109	103.109	24.684	"1,034"	136	"1,480"	24.684	24.684
ruditapes_lrc32519	25.416	25.416	-25.416	-4.154	-1.81E-05	-4.126	-3.93	8.49E-05	2.65E-03	1	translationally controlled tumor protein		33.473	747	8	652	33.473	33.473	8.057	747	17	349	8.057	8.057
ruditapes_c18690	17.769	17.769	-17.769	-4.118	-1.27E-05	-4.09	-3.279	1.04E-03	0.024	1	PREDICTED: similar to AGAP007723-PA [Tribolium castaneum]		23.468	469	287	287	23.468	23.468	5.7	469	155	155	5.7	5.7
ruditapes2_c251	9.094	9.094	-9.094	-4.113	-6.49E-06	-4.085	-2.345	0.019	0.253	1	mitochondrial ribosomal protein s21	/// 0005763 // mitochondrial small ribosomal subunit /// 0006412 // translation /// 0005743 // mitochondrial inner membrane /// 0003735 // structural constituent of ribosome	12.015	549	91	172	12.015	12.015	2.921	549	55	93	2.921	2.921
ruditapes2_c3244	24.587	24.587	-24.587	-4.098	-1.76E-05	-4.07	-3.852	1.17E-04	3.56E-03	1	calmodulin	/// 0005524 // ATP binding /// 0005516 // calmodulin binding /// 0005513 // detection of calcium ion /// 0030424 // axon /// 0051383 // kinetochore organization /// 0007268 // synaptic transmission /// 0008049 // male courtship behavior /// 0032036 // myosin heavy chain binding /// 0051533 // positive regulation of NFAT protein import into nucleus /// 0006468 // protein amino acid phosphorylation /// 0048786 // presynaptic active zone /// 0045211 // postsynaptic membrane /// 0051489 // regulation of filopodium assembly /// 0000922 // spindle pole /// 0016060 // metarhodopsin inactivation /// 0005737 // cytoplasm /// 0016062 // adaptation of rhodopsin mediated signaling /// 0007528 // neuromuscular junction development /// 0005954 // calcium- and calmodulin-dependent protein kinase complex /// 0007616 // long-term memory /// 0004683 // calmodulin-dependent protein kinase activity /// 0005509 // calcium ion binding /// 0016061 // regulation of light-activated channel activity /// 0016028 // rhabdomere /// 0030425 // dendrite /// 0007052 // mitotic spindle organization	32.523	691	79	586	32.523	32.523	7.937	691	63	318	7.937	7.937
ruditapes_c18722	4.749	4.749	-4.749	-4.096	-3.39E-06	-4.069	-1.693	0.091	0.762	1	cyclin b3	/// 0005634 // nucleus	6.282	641	105	105	6.282	6.282	1.534	641	57	57	1.534	1.534
ruditapes2_lrc7137	17.115	17.115	-17.115	-4.095	-1.22E-05	-4.068	-3.213	1.31E-03	0.029	1	eukaryotic translation initiation factor subunit h	/// 0032403 // protein complex binding /// 0043234 // protein complex /// 0006412 // translation /// 0003743 // translation initiation factor activity /// 0005829 // cytosol /// 0005792 // microsome	22.645	315	15	186	22.645	22.645	5.53	315	8	101	5.53	5.53
ruditapes_c11009	8.254	8.254	-8.254	-4.073	-5.89E-06	-4.046	-2.228	0.026	0.321	1	aconitase family member (aco-2)	/// 0007275 // multicellular organismal development /// 0000003 // reproduction	10.939	610	174	174	10.939	10.939	2.686	610	93	95	2.686	2.686
ruditapes_s38260	6.535	6.535	-6.535	-4.064	-4.66E-06	-4.037	-1.981	0.048	0.496	1	ribosomal protein l35a	/// 0009987 // cellular process /// 0005622 // intracellular	8.668	469	2	106	8.668	8.668	2.133	469	4	58	2.133	2.133
ruditapes_lrc37105	23.707	23.707	-23.707	-4.045	-1.69E-05	-4.017	-3.769	1.64E-04	4.79E-03	1	ribosomal protein l4	/// 0006414 // translational elongation /// 0005515 // protein binding /// 0022625 // cytosolic large ribosomal subunit /// 0003723 // RNA binding /// 0003735 // structural constituent of ribosome	31.494	660	83	542	31.494	31.494	7.787	660	52	298	7.787	7.787
ruditapes_c37744	13.68	13.68	-13.68	-4.043	-9.76E-06	-4.016	-2.863	4.20E-03	0.076	1	beta-tubulin		18.176	422	50	200	18.176	18.176	4.495	422	40	110	4.495	4.495
ruditapes_lrc32539	52.868	52.868	-52.868	-4.017	-3.77E-05	-3.99	-5.618	1.93E-08	1.18E-06	6.29E-04	ribosomal protein l38	/// 0006414 // translational elongation /// 0005515 // protein binding /// 0022625 // cytosolic large ribosomal subunit /// 0003723 // RNA binding /// 0003735 // structural constituent of ribosome /// 0009790 // embryonic development	70.392	310	16	569	70.392	70.392	17.524	310	6	315	17.524	17.524
ruditapes_lrc33003	27.95	27.95	-27.95	-3.999	-2.00E-05	-3.972	-4.08	4.50E-05	1.49E-03	1	mitochondrial atp synthase lipid binding protein precursor	"/// 0015992 // proton transport /// 0015078 // hydrogen ion transmembrane transporter activity /// 0045263 // proton-transporting ATP synthase complex,  coupling factor F(o)"	37.268	744	37	723	37.268	37.268	9.318	744	44	402	9.318	9.318
ruditapes2_lrc5217	159.029	159.029	-159.029	-3.994	-1.14E-04	-3.967	-9.73	2.26E-22	4.36E-20	7.36E-18	ribosomal protein l4	/// 0006414 // translational elongation /// 0005515 // protein binding /// 0022625 // cytosolic large ribosomal subunit /// 0003723 // RNA binding /// 0003735 // structural constituent of ribosome	212.142	790	774	"4,370"	212.142	212.142	53.113	790	373	"2,433"	53.113	53.113
ruditapes_c16242	5.423	5.423	-5.423	-3.987	-3.87E-06	-3.961	-1.796	0.073	0.661	1	inhibitor of apoptosis isoform a	/// 0007166 // cell surface receptor linked signal transduction /// 0050829 // defense response to Gram-negative bacterium /// 0006916 // anti-apoptosis /// 0005515 // protein binding /// 0043123 // positive regulation of I-kappaB kinase/NF-kappaB cascade /// 0019730 // antimicrobial humoral response /// 0005829 // cytosol /// 0008270 // zinc ion binding /// 0007423 // sensory organ development	7.239	551	66	104	7.239	7.239	1.815	551	40	58	1.815	1.815
ruditapes2_c2791	37.37	37.37	-37.37	-3.961	-2.67E-05	-3.934	-4.705	2.53E-06	1.10E-04	0.083	hypothetical protein Kpol_464p3 [Vanderwaltozyma polyspora DSM 70294]		49.992	593	449	773	49.992	49.992	12.622	593	239	434	12.622	12.622
ruditapes2_c361	"1,348.36"	"1,348.36"	"-1,348.36"	-3.95	-9.62E-04	-3.923	-28.258	1.23E-175	1.39E-172	4.02E-171	ribosomal protein l19	/// 0006414 // translational elongation /// 0022625 // cytosolic large ribosomal subunit /// 0003723 // RNA binding /// 0003735 // structural constituent of ribosome	"1,805.49"	661	"6,113"	"31,119"	"1,805.49"	"1,805.49"	457.13	661	"4,984"	"17,521"	457.13	457.13
ruditapes2_c3799	6.716	6.716	-6.716	-3.937	-4.79E-06	-3.91	-1.991	0.046	0.489	1	triosephosphate isomerase	/// 0004807 // triose-phosphate isomerase activity /// 0006633 // fatty acid biosynthetic process /// 0048046 // apoplast /// 0005739 // mitochondrion /// 0006096 // glycolysis /// 0005886 // plasma membrane /// 0009570 // chloroplast stroma /// 0005829 // cytosol /// 0006098 // pentose-phosphate shunt /// 0006094 // gluconeogenesis /// 0046686 // response to cadmium ion /// 0009651 // response to salt stress /// 0005618 // cell wall	9.003	558	69	131	9.003	9.003	2.287	558	40	74	2.287	2.287
ruditapes2_lrc4897	11.05	11.05	-11.05	-3.929	-7.89E-06	-3.903	-2.553	0.011	0.163	1	hydrogen-transporting atp g-	/// 0005811 // lipid particle	14.823	608	22	235	14.823	14.823	3.773	608	8	133	3.773	3.773
ruditapes2_c1356	114.688	114.688	-114.688	-3.929	-8.19E-05	-3.902	-8.225	1.95E-16	2.54E-14	6.35E-12	tropomyosin		153.844	"2,429"	831	"9,744"	153.844	153.844	39.156	"2,429"	420	"5,515"	39.156	39.156
ruditapes2_c183	13.489	13.489	-13.489	-3.916	-9.63E-06	-3.889	-2.818	4.83E-03	0.085	1	calreticulin	/// 0005783 // endoplasmic reticulum /// 0005509 // calcium ion binding /// 0051082 // unfolded protein binding /// 0006457 // protein folding	18.116	"1,122"	44	530	18.116	18.116	4.627	"1,122"	15	301	4.627	4.627
ruditapes2_c2031	14.036	14.036	-14.036	-3.91	-1.00E-05	-3.883	-2.873	4.06E-03	0.074	1	peroxiredoxin 6	/// 0044444 // cytoplasmic part /// 0043231 // intracellular membrane-bounded organelle /// 0045454 // cell redox homeostasis /// 0016491 // oxidoreductase activity /// 0016787 // hydrolase activity /// 0016209 // antioxidant activity /// 0016042 // lipid catabolic process	18.86	547	218	269	18.86	18.86	4.824	547	109	153	4.824	4.824
ruditapes_lrc38059	38.713	38.713	-38.713	-3.903	-2.76E-05	-3.877	-4.77	1.84E-06	8.25E-05	0.06	atp h+ mitochondrial f1 gamma polypeptide 1	/// 0015992 // proton transport /// 0015078 // hydrogen ion transmembrane transporter activity /// 0016787 // hydrolase activity /// 0006754 // ATP biosynthetic process	52.047	560	96	760	52.047	52.047	13.335	560	84	433	13.335	13.335
ruditapes_c16419	21.035	21.035	-21.035	-3.902	-1.50E-05	-3.876	-3.516	4.39E-04	0.011	1	plasminogen	/// 0005576 // extracellular region /// 0048518 // positive regulation of biological process /// 0005515 // protein binding /// 0051917 // regulation of fibrinolysis /// 0048513 // organ development /// 0008233 // peptidase activity /// 0050794 // regulation of cellular process	28.284	640	455	472	28.284	28.284	7.249	640	244	269	7.249	7.249
ruditapes_c3273	9.022	9.022	-9.022	-3.898	-6.44E-06	-3.872	-2.302	0.021	0.275	1	eukaryotic translation initiation factor 3 subunit 7	/// 0006413 // translational initiation /// 0003743 // translation initiation factor activity /// 0005737 // cytoplasm	12.135	493	83	156	12.135	12.135	3.113	493	49	89	3.113	3.113
ruditapes_c16708	22.732	22.732	-22.732	-3.894	-1.62E-05	-3.868	-3.653	2.59E-04	7.18E-03	1	radial spokehead-like 3		30.587	494	394	394	30.587	30.587	7.855	494	225	225	7.855	7.855
ruditapes2_lrc3676	5.413	5.413	-5.413	-3.877	-3.86E-06	-3.851	-1.78	0.075	0.676	1	predicted protein [Nematostella vectensis]		7.295	715	29	136	7.295	7.295	1.881	715	16	78	1.881	1.881
ruditapes_lrc35836	9.188	9.188	-9.188	-3.874	-6.56E-06	-3.848	-2.319	0.02	0.267	1	cytosolic malate dehydrogenase	/// 0030060 // L-malate dehydrogenase activity /// 0055114 // oxidation reduction /// 0019674 // NAD metabolic process /// 0006107 // oxaloacetate metabolic process /// 0006108 // malate metabolic process /// 0006099 // tricarboxylic acid cycle /// 0006096 // glycolysis /// 0051287 // NAD or NADH binding /// 0005625 // soluble fraction /// 0005829 // cytosol /// 0004470 // malic enzyme activity	12.386	836	11	270	12.386	12.386	3.197	836	3	155	3.197	3.197
ruditapes_c27963	9.525	9.525	-9.525	-3.872	-6.80E-06	-3.846	-2.361	0.018	0.245	1	surface protein	/// 0007126 // meiosis /// 0003774 // motor activity /// 0007064 // mitotic sister chromatid cohesion /// 0005816 // spindle pole body /// 0000742 // karyogamy during conjugation with cellular fusion /// 0007017 // microtubule-based process	12.841	884	272	296	12.841	12.841	3.316	884	158	170	3.316	3.316
ruditapes2_c2188	40.058	40.058	-40.058	-3.871	-2.86E-05	-3.844	-4.841	1.29E-06	5.92E-05	0.042	leydig cell tumor 10 kda protein homolog		54.013	524	738	738	54.013	54.013	13.955	524	424	424	13.955	13.955
ruditapes_c1966	72.247	72.247	-72.247	-3.867	-5.16E-05	-3.841	-6.499	8.07E-11	6.55E-09	2.63E-06	ribosomal protein l19	/// 0005840 // ribosome /// 0006412 // translation /// 0003735 // structural constituent of ribosome	97.447	464	232	"1,179"	97.447	97.447	25.2	464	273	678	25.2	25.2
ruditapes2_c372	99.213	99.213	-99.213	-3.864	-7.08E-05	-3.838	-7.615	2.64E-14	2.90E-12	8.61E-10	thioredoxin (allergen cop c 2)		133.85	"1,424"	"1,614"	"4,970"	133.85	133.85	34.637	"1,424"	997	"2,860"	34.637	34.637
ruditapes_lrc33622	48.056	48.056	-48.056	-3.862	-3.43E-05	-3.836	-5.299	1.17E-07	6.23E-06	3.81E-03	ribosomal protein l11	/// 0006414 // translational elongation /// 0006605 // protein targeting /// 0005730 // nucleolus /// 0005515 // protein binding /// 0022625 // cytosolic large ribosomal subunit /// 0019843 // rRNA binding /// 0006364 // rRNA processing /// 0003735 // structural constituent of ribosome /// 0042273 // ribosomal large subunit biogenesis	64.849	343	16	580	64.849	64.849	16.793	343	9	334	16.793	16.793
ruditapes2_lrc5368	12.165	12.165	-12.165	-3.858	-8.68E-06	-3.832	-2.665	7.70E-03	0.126	1	ribosomal protein l35a	/// 0006414 // translational elongation /// 0005515 // protein binding /// 0005840 // ribosome /// 0006364 // rRNA processing /// 0005829 // cytosol /// 0003723 // RNA binding /// 0003735 // structural constituent of ribosome /// 0042273 // ribosomal large subunit biogenesis	16.422	397	0	170	16.422	16.422	4.257	397	0	98	4.257	4.257
ruditapes_c23934	23.277	23.277	-23.277	-3.854	-1.66E-05	-3.828	-3.686	2.28E-04	6.40E-03	1	dead (asp-glu-ala-asp) box polypeptide 49	/// 0003676 // nucleic acid binding /// 0000166 // nucleotide binding /// 0004386 // helicase activity	31.434	499	409	409	31.434	31.434	8.156	499	236	236	8.156	8.156
ruditapes_c12514	6.072	6.072	-6.072	-3.851	-4.33E-06	-3.825	-1.882	0.06	0.583	1	ubiquitin-conjugating enzyme e2 a	/// 0006511 // ubiquitin-dependent protein catabolic process /// 0000785 // chromatin /// 0051246 // regulation of protein metabolic process /// 0001701 // in utero embryonic development /// 0043687 // post-translational protein modification /// 0006301 // postreplication repair /// 0005515 // protein binding /// 0004842 // ubiquitin-protein ligase activity	8.201	664	142	142	8.201	8.201	2.13	664	82	82	2.13	2.13
ruditapes_c5084	69.685	69.685	-69.685	-3.85	-4.97E-05	-3.824	-6.375	1.83E-10	1.44E-08	5.97E-06	beta-tubulin	/// 0005198 // structural molecule activity /// 0051258 // protein polymerization /// 0005525 // GTP binding /// 0003924 // GTPase activity /// 0043234 // protein complex /// 0005874 // microtubule /// 0007018 // microtubule-based movement	94.136	"1,223"	106	"3,002"	94.136	94.136	24.451	"1,223"	181	"1,734"	24.451	24.451
ruditapes_c1195	34.013	34.013	-34.013	-3.846	-2.43E-05	-3.82	-4.453	8.48E-06	3.34E-04	0.277	vacuolar atp synthase 16 kda proteolipid subunit	"/// 0005794 // Golgi apparatus /// 0005774 // vacuolar membrane /// 0046933 // hydrogen ion transporting ATP synthase activity,  rotational mechanism /// 0015986 // ATP synthesis coupled proton transport /// 0005515 // protein binding /// 0005764 // lysosome /// 0046961 // proton-transporting ATPase activity,  rotational mechanism /// 0016021 // integral to membrane /// 0033179 // proton-transporting V-type ATPase,  V0 domain /// 0060059 // embryonic retina morphogenesis in camera-type eye /// 0044419 // interspecies interaction between organisms"	45.964	"1,078"	"1,116"	"1,292"	45.964	45.964	11.95	"1,078"	517	747	11.95	11.95
ruditapes_s36828	164.788	164.788	-164.788	-3.84	-1.18E-04	-3.814	-9.797	1.17E-22	2.26E-20	3.80E-18	ribosomal protein l9		222.813	384	362	"2,231"	222.813	222.813	58.025	384	89	"1,292"	58.025	58.025
ruditapes_lrc33424	14.579	14.579	-14.579	-3.831	-1.04E-05	-3.805	-2.912	3.60E-03	0.067	1	ribosomal protein s11	/// 0005840 // ribosome /// 0019843 // rRNA binding /// 0006412 // translation /// 0003735 // structural constituent of ribosome	19.729	519	0	267	19.729	19.729	5.15	519	0	155	5.15	5.15
ruditapes2_c575	17.886	17.886	-17.886	-3.825	-1.28E-05	-3.799	-3.224	1.27E-03	0.028	1	cg8844	/// 0055114 // oxidation reduction /// 0005739 // mitochondrion /// 0016020 // membrane /// 0016491 // oxidoreductase activity	24.219	768	332	485	24.219	24.219	6.332	768	153	282	6.332	6.332
ruditapes_lrc34765	5.686	5.686	-5.686	-3.805	-4.06E-06	-3.779	-1.815	0.07	0.643	1	atpase mitochondrial		7.714	706	19	142	7.714	7.714	2.027	706	14	83	2.027	2.027
ruditapes_c11333	6.867	6.867	-6.867	-3.801	-4.90E-06	-3.775	-1.994	0.046	0.487	1	ataxin-2-like protein		9.318	605	57	147	9.318	9.318	2.451	605	51	86	2.451	2.451
ruditapes_c14886	4.797	4.797	-4.797	-3.799	-3.42E-06	-3.773	-1.666	0.096	0.786	1	homolog 1 ( coli)	/// 0031167 // rRNA methylation /// 0008168 // methyltransferase activity	6.511	483	82	82	6.511	6.511	1.714	483	48	48	1.714	1.714
ruditapes_c9031	22.363	22.363	-22.363	-3.784	-1.60E-05	-3.759	-3.594	3.26E-04	8.71E-03	1	calmodulin	/// 0032440 // 2-alkenal reductase activity /// 0055114 // oxidation reduction /// 0019861 // flagellum /// 0005515 // protein binding /// 0005509 // calcium ion binding	30.395	511	349	405	30.395	30.395	8.032	511	219	238	8.032	8.032
ruditapes_lrc36041	5.66	5.66	-5.66	-3.78	-4.04E-06	-3.755	-1.807	0.071	0.649	1	ribosomal protein l4	/// 0006414 // translational elongation /// 0030529 // ribonucleoprotein complex /// 0005515 // protein binding /// 0005829 // cytosol	7.696	593	0	119	7.696	7.696	2.036	593	0	70	2.036	2.036
ruditapes_c33242	17.117	17.117	-17.117	-3.777	-1.22E-05	-3.751	-3.142	1.68E-03	0.036	1	type alpha 1		23.282	649	41	394	23.282	23.282	6.165	649	53	232	6.165	6.165
ruditapes_c16504	6.848	6.848	-6.848	-3.775	-4.89E-06	-3.749	-1.987	0.047	0.491	1	sphingomyelin phosphodiesterase		9.317	531	129	129	9.317	9.317	2.468	531	74	76	2.468	2.468
ruditapes_c24998	42.487	42.487	-42.487	-3.762	-3.03E-05	-3.736	-4.945	7.62E-07	3.58E-05	0.025	arylsulfatase [Haliotis discus discus]		57.871	389	497	587	57.871	57.871	15.384	389	252	347	15.384	15.384
ruditapes2_c3715	20.766	20.766	-20.766	-3.758	-1.48E-05	-3.733	-3.456	5.48E-04	0.014	1	calmodulin	/// 0005524 // ATP binding /// 0005516 // calmodulin binding /// 0006091 // generation of precursor metabolites and energy /// 0019904 // protein domain specific binding /// 0031997 // N-terminal myristoylation domain binding /// 0006468 // protein amino acid phosphorylation /// 0004687 // myosin light chain kinase activity /// 0005886 // plasma membrane /// 0005876 // spindle microtubule /// 0031432 // titin binding /// 0000922 // spindle pole /// 0005829 // cytosol /// 0051592 // response to calcium ion /// 0007049 // cell cycle /// 0005813 // centrosome /// 0008218 // bioluminescence /// 0000287 // magnesium ion binding /// 0007186 // G-protein coupled receptor protein signaling pathway /// 0017022 // myosin binding /// 0005509 // calcium ion binding /// 0018298 // protein-chromophore linkage /// 0032465 // regulation of cytokinesis /// 0043388 // positive regulation of DNA binding	28.295	717	254	529	28.295	28.295	7.528	717	124	313	7.528	7.528
ruditapes2_c1323	24.943	24.943	-24.943	-3.754	-1.78E-05	-3.729	-3.786	1.53E-04	4.50E-03	1	calreticulin	/// 0005783 // endoplasmic reticulum /// 0005509 // calcium ion binding /// 0051082 // unfolded protein binding /// 0006457 // protein folding	34	"1,093"	94	969	34	34	9.057	"1,093"	33	574	9.057	9.057
ruditapes_lrc35190	8.486	8.486	-8.486	-3.736	-6.06E-06	-3.711	-2.205	0.027	0.335	1	fungal metazoan origin like protein variant 2	/// 0016021 // integral to membrane	11.588	695	195	210	11.588	11.588	3.102	695	108	125	3.102	3.102
ruditapes_c19539	4.752	4.752	-4.752	-3.733	-3.39E-06	-3.708	-1.65	0.099	0.801	1	g patch domain containing 4		6.492	833	141	141	6.492	6.492	1.739	833	84	84	1.739	1.739
ruditapes2_lrc4839	72.323	72.323	-72.323	-3.716	-5.16E-05	-3.691	-6.429	1.29E-10	1.03E-08	4.20E-06	ribosomal protein l6	/// 0005840 // ribosome /// 0006412 // translation /// 0003735 // structural constituent of ribosome	98.947	662	106	"1,708"	98.947	98.947	26.624	662	63	"1,022"	26.624	26.624
ruditapes2_c3037	17.496	17.496	-17.496	-3.713	-1.25E-05	-3.688	-3.161	1.57E-03	0.034	1	atp:adp antiporter	/// 0005200 // structural constituent of cytoskeleton /// 0005773 // vacuole /// 0005856 // cytoskeleton /// 0048767 // root hair elongation /// 0007010 // cytoskeleton organization /// 0005730 // nucleolus /// 0005488 // binding /// 0005886 // plasma membrane /// 0015865 // purine nucleotide transport /// 0005471 // ATP:ADP antiporter activity /// 0009507 // chloroplast /// 0016021 // integral to membrane /// 0005743 // mitochondrial inner membrane /// 0005618 // cell wall	23.944	583	31	364	23.944	23.944	6.449	583	33	218	6.449	6.449
ruditapes_c3430	22.867	22.867	-22.867	-3.703	-1.63E-05	-3.678	-3.611	3.05E-04	8.25E-03	1	hypothetical protein [Paramecium tetraurelia strain d4-2]		31.326	475	242	388	31.326	31.326	8.459	475	172	233	8.459	8.459
ruditapes_lrc33495	696.345	696.345	-696.345	-3.702	-4.97E-04	-3.677	-19.93	2.26E-88	1.61E-85	7.38E-84	aplp_locmi ame: full=apolipophorins contains: ame: full=apolipophorin-2 ame: full=apolipophorin ii ame: full=apolp-2 contains: ame: full=apolipophorin-1 ame: full=apolipophorin i ame: full=apolp-1 flags: precursor		954.064	963	881	"23,957"	954.064	954.064	257.719	963	597	"14,391"	257.719	257.719
ruditapes_c13884	13.513	13.513	-13.513	-3.679	-9.64E-06	-3.654	-2.77	5.60E-03	0.096	1	l _3		18.557	465	224	225	18.557	18.557	5.044	465	136	136	5.044	5.044
ruditapes2_lrc4195	18.709	18.709	-18.709	-3.67	-1.34E-05	-3.645	-3.257	1.12E-03	0.025	1	dynein light chain	/// 0030286 // dynein complex /// 0005737 // cytoplasm /// 0005874 // microtubule /// 0003777 // microtubule motor activity /// 0007017 // microtubule-based process	25.717	598	27	401	25.717	25.717	7.008	598	19	243	7.008	7.008
ruditapes_c3961	20.31	20.31	-20.31	-3.661	-1.45E-05	-3.637	-3.392	6.95E-04	0.017	1	h+ transporting f1 atp synthase epsilon subunit	"/// 0000275 // mitochondrial proton-transporting ATP synthase complex,  catalytic core F(1) /// 0046933 // hydrogen ion transporting ATP synthase activity,  rotational mechanism /// 0015986 // ATP synthesis coupled proton transport /// 0046961 // proton-transporting ATPase activity,  rotational mechanism"	27.942	409	22	298	27.942	27.942	7.632	409	12	181	7.632	7.632
ruditapes2_c649	5.736	5.736	-5.736	-3.644	-4.09E-06	-3.619	-1.8	0.072	0.657	1	proline-rich transmembrane protein 1		7.905	"1,892"	133	390	7.905	7.905	2.169	"1,892"	86	238	2.169	2.169
ruditapes_c22159	9.46	9.46	-9.46	-3.619	-6.75E-06	-3.595	-2.307	0.021	0.273	1	coiled-coil domain containing 96		13.072	487	166	166	13.072	13.072	3.612	487	102	102	3.612	3.612
ruditapes_lrc22398	17.291	17.291	-17.291	-3.618	-1.23E-05	-3.594	-3.118	1.82E-03	0.038	1	60s ribosomal protein l40	"/// 0005524 // ATP binding /// 0005634 // nucleus /// 0019079 // viral genome replication /// 0006508 // proteolysis /// 0003968 // RNA-directed RNA polymerase activity /// 0033897 // ribonuclease T2 activity /// 0005515 // protein binding /// 0019082 // viral protein processing /// 0005840 // ribosome /// 0006410 // transcription,  RNA-dependent /// 0030528 // transcription regulator activity /// 0016021 // integral to membrane /// 0006412 // translation /// 0016567 // protein ubiquitination /// 0003723 // RNA binding /// 0004252 // serine-type endopeptidase activity /// 0003735 // structural constituent of ribosome /// 0045941 // positive regulation of transcription /// 0004386 // helicase activity"	23.896	329	114	205	23.896	23.896	6.605	329	40	126	6.605	6.605
ruditapes_lrc32511	13.825	13.825	-13.825	-3.6	-9.86E-06	-3.575	-2.784	5.37E-03	0.093	1	atp synthase subunit b		19.143	587	74	293	19.143	19.143	5.318	587	47	181	5.318	5.318
ruditapes_lrc31742	249.713	249.713	-249.713	-3.584	-1.78E-04	-3.56	-11.817	3.20E-32	9.65E-30	1.04E-27	basic transcription factor 3-like 4		346.344	935	"1,041"	"8,444"	346.344	346.344	96.632	935	162	"5,239"	96.632	96.632
ruditapes2_c368	42.927	42.927	-42.927	-3.577	-3.06E-05	-3.553	-4.896	9.77E-07	4.53E-05	0.032	cyclophilin-type peptidyl-prolyl cis-trans isomerase	/// 0003755 // peptidyl-prolyl cis-trans isomerase activity /// 0006457 // protein folding	59.584	"1,053"	230	"1,636"	59.584	59.584	16.656	"1,053"	118	"1,017"	16.656	16.656
ruditapes_lrc16474	24.408	24.408	-24.408	-3.564	-1.74E-05	-3.54	-3.688	2.26E-04	6.37E-03	1	h3 family 3b	/// 0005634 // nucleus /// 0006334 // nucleosome assembly /// 0003677 // DNA binding /// 0000786 // nucleosome	33.928	980	29	867	33.928	33.928	9.52	980	11	541	9.52	9.52
ruditapes2_lrc5464	6.879	6.879	-6.879	-3.558	-4.91E-06	-3.534	-1.957	0.05	0.516	1	ribosomal protein s13	/// 0006414 // translational elongation /// 0005730 // nucleolus /// 0005515 // protein binding /// 0003729 // mRNA binding /// 0003735 // structural constituent of ribosome /// 0022627 // cytosolic small ribosomal subunit /// 0033119 // negative regulation of RNA splicing	9.568	481	1	120	9.568	9.568	2.689	481	0	75	2.689	2.689
ruditapes_c9915	9.222	9.222	-9.222	-3.518	-6.58E-06	-3.494	-2.258	0.024	0.302	1	serologically defined colon cancer antigen 1		12.885	631	212	212	12.885	12.885	3.662	631	134	134	3.662	3.662
ruditapes_lrc33154	19.844	19.844	-19.844	-3.51	-1.42E-05	-3.486	-3.309	9.35E-04	0.022	1	ribosomal protein l8	/// 0006414 // translational elongation /// 0022625 // cytosolic large ribosomal subunit /// 0019843 // rRNA binding /// 0003735 // structural constituent of ribosome	27.75	890	42	644	27.75	27.75	7.906	890	15	408	7.906	7.906
ruditapes2_c1223	23.069	23.069	-23.069	-3.507	-1.65E-05	-3.483	-3.567	3.61E-04	9.49E-03	1	orf2-encoded protein		32.272	877	555	738	32.272	32.272	9.203	877	335	468	9.203	9.203
ruditapes_lrc39142	83.652	83.652	-83.652	-3.506	-5.97E-05	-3.482	-6.792	1.11E-11	9.62E-10	3.61E-07	60s ribosomal protein l7a		117.037	483	132	"1,474"	117.037	117.037	33.385	483	146	935	33.385	33.385
ruditapes_s39680	10.01	10.01	-10.01	-3.502	-7.14E-06	-3.478	-2.349	0.019	0.251	1	ribosomal protein l7a	/// 0042788 // polysomal ribosome /// 0006414 // translational elongation /// 0005624 // membrane fraction /// 0022625 // cytosolic large ribosomal subunit /// 0003723 // RNA binding	14.011	375	0	137	14.011	14.011	4.001	375	1	87	4.001	4.001
ruditapes2_lrc5054	44.412	44.412	-44.412	-3.482	-3.17E-05	-3.459	-4.938	7.88E-07	3.70E-05	0.026	ribosomal protein l12e	/// 0005811 // lipid particle /// 0022625 // cytosolic large ribosomal subunit /// 0000022 // mitotic spindle elongation /// 0006412 // translation /// 0003735 // structural constituent of ribosome	62.305	666	2	"1,082"	62.305	62.305	17.893	666	0	691	17.893	17.893
ruditapes2_c375	5.134	5.134	-5.134	-3.47	-3.66E-06	-3.447	-1.677	0.094	0.776	1	cg5499-pa	/// 0005694 // chromosome	7.213	755	0	142	7.213	7.213	2.079	755	0	91	2.079	2.079
ruditapes_c4565	8.792	8.792	-8.792	-3.459	-6.27E-06	-3.436	-2.193	0.028	0.344	1	oncoprotein induced transcript 3		12.368	738	74	238	12.368	12.368	3.575	738	71	153	3.575	3.575
ruditapes_c314	24.859	24.859	-24.859	-3.456	-1.77E-05	-3.433	-3.686	2.28E-04	6.40E-03	1	mitochondrial ribosomal protein l24	/// 0044424 // intracellular part	34.98	990	903	903	34.98	34.98	10.121	990	581	581	10.121	10.121
ruditapes_lrc12146	135.627	135.627	-135.627	-3.428	-9.67E-05	-3.405	-8.587	8.92E-18	1.29E-15	2.91E-13	ribosomal protein s7	/// 0006414 // translational elongation /// 0005730 // nucleolus /// 0005515 // protein binding /// 0042274 // ribosomal small subunit biogenesis /// 0006364 // rRNA processing /// 0003723 // RNA binding /// 0003735 // structural constituent of ribosome /// 0022627 // cytosolic small ribosomal subunit	191.477	696	20	"3,475"	191.477	191.477	55.85	696	15	"2,254"	55.85	55.85
ruditapes_c7467	10.289	10.289	-10.289	-3.405	-7.34E-06	-3.382	-2.36	0.018	0.246	1	coiled-coil domain containing 137		14.567	516	196	196	14.567	14.567	4.278	516	128	128	4.278	4.278
ruditapes2_c1553	5.575	5.575	-5.575	-3.404	-3.98E-06	-3.381	-1.737	0.082	0.718	1	gram negative bacteria binding protein 2		7.895	"1,093"	225	225	7.895	7.895	2.319	"1,093"	147	147	2.319	2.319
ruditapes2_c3709	73.377	73.377	-73.377	-3.389	-5.23E-05	-3.366	-6.292	3.13E-10	2.41E-08	1.02E-05	glutathione peroxidase 3	/// 0006749 // glutathione metabolic process /// 0005625 // soluble fraction /// 0005615 // extracellular space /// 0042744 // hydrogen peroxide catabolic process /// 0008430 // selenium binding /// 0008134 // transcription factor binding /// 0006982 // response to lipid hydroperoxide /// 0004602 // glutathione peroxidase activity /// 0051289 // protein homotetramerization /// 0043295 // glutathione binding	104.094	882	833	"2,394"	104.094	104.094	30.718	882	444	"1,571"	30.718	30.718
ruditapes2_lrc6231	25.125	25.125	-25.125	-3.368	-1.79E-05	-3.345	-3.674	2.39E-04	6.65E-03	1	60s ribosomal protein l13	/// 0030529 // ribonucleoprotein complex /// 0051726 // regulation of cell cycle	35.736	616	9	574	35.736	35.736	10.611	616	4	379	10.611	10.611
ruditapes_lrc32635	50.996	50.996	-50.996	-3.355	-3.64E-05	-3.333	-5.228	1.71E-07	8.90E-06	5.58E-03	ribosomal protein l4	/// 0006414 // translational elongation /// 0030529 // ribonucleoprotein complex /// 0005515 // protein binding /// 0005829 // cytosol	72.648	634	160	"1,201"	72.648	72.648	21.652	634	189	796	21.652	21.652
ruditapes_lrc34355	10.209	10.209	-10.209	-3.354	-7.28E-06	-3.331	-2.339	0.019	0.256	1	lysozyme [Venerupis philippinarum]		14.547	493	141	187	14.547	14.547	4.338	493	102	124	4.338	4.338
ruditapes2_lrc5554	7.866	7.866	-7.866	-3.351	-5.61E-06	-3.329	-2.053	0.04	0.441	1	ribosomal protein l32	/// 0006414 // translational elongation /// 0005515 // protein binding /// 0022625 // cytosolic large ribosomal subunit /// 0003735 // structural constituent of ribosome	11.212	366	0	107	11.212	11.212	3.345	366	0	71	3.345	3.345
ruditapes2_c5486	6.938	6.938	-6.938	-3.343	-4.95E-06	-3.321	-1.926	0.054	0.545	1	ribosomal protein s3a	/// 0006414 // translational elongation /// 0005730 // nucleolus /// 0006413 // translational initiation /// 0005515 // protein binding /// 0006917 // induction of apoptosis /// 0003723 // RNA binding /// 0003735 // structural constituent of ribosome /// 0022627 // cytosolic small ribosomal subunit	9.898	833	4	215	9.898	9.898	2.961	833	2	143	2.961	2.961
ruditapes_lrc11227	5.294	5.294	-5.294	-3.336	-3.78E-06	-3.313	-1.681	0.093	0.773	1	mitochondrial ubiquinol-cytochrome c reductase hinge protein	"/// 0006122 // mitochondrial electron transport,  ubiquinol to cytochrome c /// 0005750 // mitochondrial respiratory chain complex III /// 0008121 // ubiquinol-cytochrome-c reductase activity"	7.561	700	23	138	7.561	7.561	2.267	700	21	92	2.267	2.267
ruditapes_c1436	15.544	15.544	-15.544	-3.331	-1.11E-05	-3.308	-2.879	3.98E-03	0.073	1	aldehyde dehydrogenase 1a1	"/// 0016620 // oxidoreductase activity,  acting on the aldehyde or oxo group of donors,  NAD or NADP as acceptor /// 0008152 // metabolic process /// 0044424 // intracellular part"	22.213	587	245	340	22.213	22.213	6.669	587	139	227	6.669	6.669
ruditapes_lrc34981	8.23	8.23	-8.23	-3.328	-5.87E-06	-3.305	-2.094	0.036	0.411	1	prefoldin subunit 1	/// 0005737 // cytoplasm	11.765	678	28	208	11.765	11.765	3.536	678	8	139	3.536	3.536
ruditapes_lrc34345	12.736	12.736	-12.736	-3.326	-9.08E-06	-3.303	-2.605	9.19E-03	0.145	1	tubulin polymerization-promoting protein family member 3	/// 0002119 // nematode larval development /// 0005730 // nucleolus /// 0000003 // reproduction /// 0005737 // cytoplasm	18.211	"1,074"	57	510	18.211	18.211	5.476	"1,074"	41	341	5.476	5.476
ruditapes2_lrc4348	23.939	23.939	-23.939	-3.312	-1.71E-05	-3.29	-3.567	3.62E-04	9.50E-03	1	ribosomal protein l4	/// 0006414 // translational elongation /// 0005515 // protein binding /// 0005840 // ribosome /// 0005829 // cytosol /// 0003735 // structural constituent of ribosome	34.291	718	80	642	34.291	34.291	10.352	718	56	431	10.352	10.352
ruditapes_lrc6872	361.924	361.924	-361.924	-3.306	-2.58E-04	-3.284	-13.862	1.09E-43	4.17E-41	3.54E-39	60s ribosomal protein l23a	/// 0006414 // translational elongation /// 0005515 // protein binding /// 0022625 // cytosolic large ribosomal subunit /// 0019843 // rRNA binding /// 0000166 // nucleotide binding /// 0003735 // structural constituent of ribosome	518.849	584	698	"7,901"	518.849	518.849	156.925	584	277	"5,314"	156.925	156.925
ruditapes_c2613	27.794	27.794	-27.794	-3.304	-1.98E-05	-3.282	-3.84	1.23E-04	3.71E-03	1	tandem repeat galectin	/// 0005529 // sugar binding	39.854	612	219	636	39.854	39.854	12.061	612	141	428	12.061	12.061
ruditapes_lrc32264	21.08	21.08	-21.08	-3.303	-1.50E-05	-3.281	-3.344	8.27E-04	0.019	1	atp binding		30.234	893	475	704	30.234	30.234	9.154	893	255	474	9.154	9.154
ruditapes2_lrc4717	116.201	116.201	-116.201	-3.29	-8.29E-05	-3.268	-7.84	4.50E-15	5.34E-13	1.47E-10	translationally controlled tumor protein		166.947	957	417	"4,166"	166.947	166.947	50.746	957	377	"2,816"	50.746	50.746
ruditapes_c7762	5.808	5.808	-5.808	-3.276	-4.14E-06	-3.253	-1.75	0.08	0.702	1	tpa_exp: tyrosine recombinase		8.36	500	109	109	8.36	8.36	2.552	500	74	74	2.552	2.552
ruditapes2_lrc4997	81.388	81.388	-81.388	-3.267	-5.80E-05	-3.245	-6.546	5.91E-11	4.90E-09	1.93E-06	ribosomal protein s13	/// 0006414 // translational elongation /// 0005730 // nucleolus /// 0005515 // protein binding /// 0003729 // mRNA binding /// 0003735 // structural constituent of ribosome /// 0022627 // cytosolic small ribosomal subunit /// 0033119 // negative regulation of RNA splicing	117.286	515	44	"1,575"	117.286	117.286	35.898	515	27	"1,072"	35.898	35.898
ruditapes_lrc34654	183.616	183.616	-183.616	-3.261	-1.31E-04	-3.239	-9.826	8.73E-23	1.73E-20	2.85E-18	60s ribosomal protein l32	/// 0005840 // ribosome /// 0006412 // translation /// 0003735 // structural constituent of ribosome	264.838	403	57	"2,783"	264.838	264.838	81.222	403	56	"1,898"	81.222	81.222
ruditapes2_c2679	5.114	5.114	-5.114	-3.259	-3.65E-06	-3.237	-1.639	0.101	0.812	1	pol-like protein		7.378	998	192	192	7.378	7.378	2.264	998	131	131	2.264	2.264
ruditapes_lrc35870	5.172	5.172	-5.172	-3.256	-3.69E-06	-3.234	-1.648	0.099	0.803	1	nadh: oxidoreductase subunit	/// 0005743 // mitochondrial inner membrane	7.464	632	80	123	7.464	7.464	2.292	632	29	84	2.292	2.292
ruditapes_lrc36808	30.851	30.851	-30.851	-3.254	-2.20E-05	-3.232	-4.025	5.71E-05	1.85E-03	1	thaumatin-like protein	/// 0048046 // apoplast /// 0010224 // response to UV-B /// 0009627 // systemic acquired resistance /// 0031540 // regulation of anthocyanin biosynthetic process /// 0005515 // protein binding /// 0016023 // cytoplasmic membrane-bounded vesicle /// 0005618 // cell wall	44.536	465	5	540	44.536	44.536	13.685	465	3	369	13.685	13.685
ruditapes_lrc33561	178.397	178.397	-178.397	-3.239	-1.27E-04	-3.217	-9.662	4.36E-22	8.31E-20	1.42E-17	ribosomal protein l4	/// 0030529 // ribonucleoprotein complex /// 0005488 // binding /// 0006412 // translation /// 0005829 // cytosol	258.086	836	430	"5,626"	258.086	258.086	79.689	836	358	"3,863"	79.689	79.689
ruditapes_lrc27061	81.368	81.368	-81.368	-3.235	-5.80E-05	-3.214	-6.523	6.89E-11	5.62E-09	2.25E-06	translation elongation factor ef-2	/// 0005525 // GTP binding /// 0003924 // GTPase activity /// 0003746 // translation elongation factor activity	117.767	452	302	"1,388"	117.767	117.767	36.399	452	205	954	36.399	36.399
ruditapes_c14604	11.07	11.07	-11.07	-3.234	-7.89E-06	-3.212	-2.405	0.016	0.222	1	retinal homeobox protein		16.026	682	285	285	16.026	16.026	4.956	682	196	196	4.956	4.956
ruditapes_c26408	8.169	8.169	-8.169	-3.218	-5.83E-06	-3.196	-2.063	0.039	0.435	1	gene model		11.852	398	116	123	11.852	11.852	3.683	398	81	85	3.683	3.683
ruditapes2_c188	131.761	131.761	-131.761	-3.212	-9.40E-05	-3.19	-8.28	1.24E-16	1.64E-14	4.03E-12	ribosomal protein s2	/// 0031981 // nuclear lumen /// 0015935 // small ribosomal subunit /// 0006412 // translation /// 0017134 // fibroblast growth factor binding /// 0005829 // cytosol	191.335	735	155	"3,667"	191.335	191.335	59.574	735	110	"2,539"	59.574	59.574
ruditapes_c12763	14.058	14.058	-14.058	-3.211	-1.00E-05	-3.189	-2.704	6.85E-03	0.115	1	hypothetical protein BRAFLDRAFT_118696 [Branchiostoma floridae]		20.417	556	219	296	20.417	20.417	6.359	556	172	205	6.359	6.359
ruditapes2_c404	369.535	369.535	-369.535	-3.207	-2.64E-04	-3.185	-13.86	1.11E-43	4.20E-41	3.61E-39	dead box atp-dependent rna		536.973	"1,175"	"16,387"	"16,452"	536.973	536.973	167.438	"1,175"	"11,345"	"11,408"	167.438	167.438
ruditapes2_lrc3379	451.357	451.357	-451.357	-3.201	-3.22E-04	-3.18	-15.309	6.68E-53	3.03E-50	2.18E-48	tubulin beta-2c chain	/// 0000166 // nucleotide binding /// 0007017 // microtubule-based process	656.384	754	"1,960"	"12,905"	656.384	656.384	205.028	754	"1,856"	"8,964"	205.028	205.028
ruditapes2_c147	618.039	618.039	-618.039	-3.191	-4.41E-04	-3.17	-17.895	1.30E-71	7.67E-69	4.22E-67	heat shock protein 70		900.089	885	"12,822"	"20,771"	900.089	900.089	282.051	885	"8,040"	"14,474"	282.051	282.051
ruditapes_s37523	85.933	85.933	-85.933	-3.184	-6.13E-05	-3.163	-6.666	2.63E-11	2.24E-09	8.57E-07	ribosomal protein l27a	/// 0022626 // cytosolic ribosome /// 0006412 // translation /// 0003735 // structural constituent of ribosome	125.278	540	447	"1,764"	125.278	125.278	39.346	540	387	"1,232"	39.346	39.346
ruditapes2_c129	33.064	33.064	-33.064	-3.18	-2.36E-05	-3.158	-4.133	3.59E-05	1.22E-03	1	lethal 35di		48.234	939	204	"1,181"	48.234	48.234	15.17	939	183	826	15.17	15.17
ruditapes2_c203	"2,611.93"	"2,611.93"	"-2,611.93"	-3.171	-1.86E-03	-3.15	-36.739	2.14E-295	3.32E-292	6.97E-291	cg12324 protein	/// 0005811 // lipid particle /// 0000022 // mitotic spindle elongation /// 0006412 // translation /// 0003735 // structural constituent of ribosome /// 0022627 // cytosolic small ribosomal subunit	"3,814.89"	483	"3,463"	"48,046"	"3,814.89"	"3,814.89"	"1,202.95"	483	"5,877"	"33,691"	"1,202.95"	"1,202.95"
ruditapes2_lrc5220	33.688	33.688	-33.688	-3.169	-2.40E-05	-3.147	-4.167	3.09E-05	1.06E-03	1	atp synthase beta subunit	"/// 0005524 // ATP binding /// 0045261 // proton-transporting ATP synthase complex,  catalytic core F(1) /// 0046933 // hydrogen ion transporting ATP synthase activity,  rotational mechanism /// 0015986 // ATP synthesis coupled proton transport /// 0046961 // proton-transporting ATPase activity,  rotational mechanism /// 0008553 // hydrogen-exporting ATPase activity,  phosphorylative mechanism"	49.221	755	51	969	49.221	49.221	15.533	755	58	680	15.533	15.533
ruditapes2_lrc5750	20.332	20.332	-20.332	-3.168	-1.45E-05	-3.147	-3.237	1.21E-03	0.027	1	ribosomal protein s18	/// 0007275 // multicellular organismal development /// 0006414 // translational elongation /// 0051726 // regulation of cell cycle /// 0019843 // rRNA binding /// 0003735 // structural constituent of ribosome /// 0022627 // cytosolic small ribosomal subunit /// 0006417 // regulation of translation	29.709	537	10	416	29.709	29.709	9.378	537	3	292	9.378	9.378
ruditapes_c15609	10.128	10.128	-10.128	-3.168	-7.22E-06	-3.147	-2.284	0.022	0.285	1	splicing factor subunit 10kda	"/// 0005681 // spliceosomal complex /// 0000398 // nuclear mRNA splicing,  via spliceosome /// 0007052 // mitotic spindle organization"	14.799	539	208	208	14.799	14.799	4.671	539	146	146	4.671	4.671
ruditapes_c5732	7.898	7.898	-7.898	-3.152	-5.63E-06	-3.131	-2.014	0.044	0.471	1	taf10 rna polymerase ii	/// 0048471 // perinuclear region of cytoplasm /// 0005515 // protein binding /// 0006368 // RNA elongation from RNA polymerase II promoter /// 0005669 // transcription factor TFIID complex /// 0006915 // apoptosis /// 0000082 // G1/S transition of mitotic cell cycle /// 0006367 // transcription initiation from RNA polymerase II promoter /// 0003702 // RNA polymerase II transcription factor activity	11.569	484	3	146	11.569	11.569	3.67	484	2	103	3.67	3.67
ruditapes2_c212	37.377	37.377	-37.377	-3.146	-2.67E-05	-3.125	-4.377	1.20E-05	4.55E-04	0.391	aldehyde dehydrogenase 1a1	/// 0055114 // oxidation reduction /// 0002072 // optic cup morphogenesis involved in camera-type eye development /// 0005634 // nucleus /// 0043065 // positive regulation of apoptosis /// 0042573 // retinoic acid metabolic process /// 0021768 // nucleus accumbens development /// 0005829 // cytosol /// 0048048 // embryonic eye morphogenesis /// 0004030 // aldehyde dehydrogenase [NAD(P)+] activity /// 0004028 // 3-chloroallyl aldehyde dehydrogenase activity /// 0060166 // olfactory pit development /// 0001758 // retinal dehydrogenase activity	54.792	"1,017"	"1,157"	"1,453"	54.792	54.792	17.415	"1,017"	777	"1,027"	17.415	17.415
ruditapes2_lrc3255	"3,558.42"	"3,558.42"	"-3,558.42"	-3.139	-2.54E-03	-3.118	-42.745	0	0	0	beta tubulin	/// 0005198 // structural molecule activity /// 0051258 // protein polymerization /// 0005525 // GTP binding /// 0003924 // GTPase activity /// 0043234 // protein complex /// 0005874 // microtubule /// 0007018 // microtubule-based movement	"5,221.68"	"1,194"	"27,240"	"162,571"	"5,221.68"	"5,221.68"	"1,663.26"	"1,194"	"22,395"	"115,155"	"1,663.26"	"1,663.26"
ruditapes_lrc33090	84.283	84.283	-84.283	-3.138	-6.01E-05	-3.117	-6.568	5.12E-11	4.26E-09	1.67E-06	ribosomal protein l21	/// 0005840 // ribosome /// 0006412 // translation /// 0003735 // structural constituent of ribosome	123.702	532	13	"1,716"	123.702	123.702	39.419	532	6	"1,216"	39.419	39.419
ruditapes_lrc14244	8.453	8.453	-8.453	-3.126	-6.03E-06	-3.104	-2.077	0.038	0.423	1	ribosomal protein sa	/// 0005840 // ribosome /// 0009987 // cellular process	12.43	941	49	305	12.43	12.43	3.977	941	31	217	3.977	3.977
ruditapes_lrc33828	28.699	28.699	-28.699	-3.125	-2.05E-05	-3.104	-3.826	1.30E-04	3.90E-03	1	alpha actin	"/// 0005524 // ATP binding /// 0042643 // actomyosin,  actin part /// 0016887 // ATPase activity /// 0014829 // vascular smooth muscle contraction /// 0030240 // muscle thin filament assembly /// 0031674 // I band /// 0030048 // actin filament-based movement /// 0006915 // apoptosis /// 0060047 // heart contraction /// 0008217 // regulation of blood pressure /// 0017022 // myosin binding /// 0055003 // cardiac myofibril assembly /// 0055008 // cardiac muscle tissue morphogenesis"	42.204	627	225	690	42.204	42.204	13.505	627	158	491	13.505	13.505
ruditapes_c24872	12.115	12.115	-12.115	-3.123	-8.64E-06	-3.102	-2.486	0.013	0.188	1	serine protease inhibitor 2		17.821	269	125	125	17.821	17.821	5.706	269	89	89	5.706	5.706
ruditapes_c14697	7.247	7.247	-7.247	-3.122	-5.17E-06	-3.101	-1.922	0.055	0.547	1	protein		10.661	500	139	139	10.661	10.661	3.415	500	99	99	3.415	3.415
ruditapes_c14388	6.733	6.733	-6.733	-3.119	-4.80E-06	-3.098	-1.852	0.064	0.608	1	hypothetical protein BRAFLDRAFT_176686 [Branchiostoma floridae]		9.911	445	113	115	9.911	9.911	3.178	445	80	82	3.178	3.178
ruditapes_c26195	5.451	5.451	-5.451	-3.113	-3.89E-06	-3.092	-1.665	0.096	0.786	1	multidrug resistance protein	"/// 0005524 // ATP binding /// 0006810 // transport /// 0016021 // integral to membrane /// 0042626 // ATPase activity,  coupled to transmembrane movement of substances"	8.031	234	49	49	8.031	8.031	2.579	234	35	35	2.579	2.579
ruditapes_lrc36006	31.004	31.004	-31.004	-3.11	-2.21E-05	-3.089	-3.97	7.18E-05	2.29E-03	1	ribosomal protein l4	/// 0006414 // translational elongation /// 0005515 // protein binding /// 0005840 // ribosome /// 0005829 // cytosol /// 0003735 // structural constituent of ribosome	45.698	642	311	765	45.698	45.698	14.694	642	221	547	14.694	14.694
ruditapes_lrc20388	31.374	31.374	-31.374	-3.109	-2.24E-05	-3.088	-3.993	6.52E-05	2.09E-03	1	60s ribosomal protein l9		46.251	233	22	281	46.251	46.251	14.877	233	13	201	14.877	14.877
ruditapes_lrc33927	269.085	269.085	-269.085	-3.107	-1.92E-04	-3.086	-11.694	1.38E-31	4.12E-29	4.49E-27	ribosomal protein l23a	/// 0006414 // translational elongation /// 0005515 // protein binding /// 0022625 // cytosolic large ribosomal subunit /// 0019843 // rRNA binding /// 0000166 // nucleotide binding /// 0003735 // structural constituent of ribosome	396.788	410	373	"4,242"	396.788	396.788	127.703	410	217	"3,036"	127.703	127.703
ruditapes_c10644	11.933	11.933	-11.933	-3.106	-8.51E-06	-3.085	-2.462	0.014	0.198	1	accessory gland protein		17.6	353	162	162	17.6	17.6	5.667	353	116	116	5.667	5.667
ruditapes2_lrc4656	255.746	255.746	-255.746	-3.097	-1.82E-04	-3.076	-11.387	4.88E-30	1.37E-27	1.59E-25	40s ribosomal protein s8	/// 0044424 // intracellular part	377.691	831	"3,961"	"8,184"	377.691	377.691	121.945	831	"1,134"	"5,876"	121.945	121.945
ruditapes_lrc33832	22.318	22.318	-22.318	-3.097	-1.59E-05	-3.076	-3.363	7.70E-04	0.018	1	atp:adp antiporter	/// 0005739 // mitochondrion /// 0016020 // membrane	32.96	619	5	532	32.96	32.96	10.643	619	1	382	10.643	10.643
ruditapes2_c1879	13.216	13.216	-13.216	-3.086	-9.42E-06	-3.065	-2.585	9.74E-03	0.152	1	c030046i01rik protein		19.55	716	365	365	19.55	19.55	6.335	716	263	263	6.335	6.335
ruditapes_lrc33333	164.512	164.512	-164.512	-3.081	-1.17E-04	-3.06	-9.115	7.90E-20	1.32E-17	2.58E-15	ribosomal protein s17	/// 0006414 // translational elongation /// 0034101 // erythrocyte homeostasis /// 0006413 // translational initiation /// 0042274 // ribosomal small subunit biogenesis /// 0006364 // rRNA processing /// 0003735 // structural constituent of ribosome /// 0022627 // cytosolic small ribosomal subunit	243.567	601	162	"3,817"	243.567	243.567	79.055	601	83	"2,755"	79.055	79.055
ruditapes_c25464	12.17	12.17	-12.17	-3.065	-8.68E-06	-3.044	-2.474	0.013	0.193	1	gene model		18.064	673	311	317	18.064	18.064	5.894	673	227	230	5.894	5.894
ruditapes_lrc33408	40.228	40.228	-40.228	-3.063	-2.87E-05	-3.042	-4.497	6.89E-06	2.76E-04	0.225	nucleoside diphosphate kinase	/// 0005524 // ATP binding /// 0007424 // open tracheal system development /// 0006468 // protein amino acid phosphorylation /// 0006183 // GTP biosynthetic process /// 0006241 // CTP biosynthetic process /// 0004550 // nucleoside diphosphate kinase activity /// 0006228 // UTP biosynthetic process	59.729	818	663	"1,274"	59.729	59.729	19.502	818	400	925	19.502	19.502
ruditapes_lrc33492	17.946	17.946	-17.946	-3.053	-1.28E-05	-3.032	-3	2.70E-03	0.053	1	ribosomal protein l5	/// 0006414 // translational elongation /// 0005515 // protein binding /// 0005840 // ribosome /// 0006364 // rRNA processing /// 0005829 // cytosol /// 0042273 // ribosomal large subunit biogenesis	26.687	582	1	405	26.687	26.687	8.741	582	1	295	8.741	8.741
ruditapes_c36518	96.604	96.604	-96.604	-3.044	-6.89E-05	-3.024	-6.953	3.57E-12	3.24E-10	1.16E-07	ribosomal protein l35	/// 0006414 // translational elongation /// 0005730 // nucleolus /// 0005515 // protein binding /// 0003729 // mRNA binding /// 0022625 // cytosolic large ribosomal subunit /// 0003735 // structural constituent of ribosome	143.857	450	321	"1,688"	143.857	143.857	47.253	450	261	"1,233"	47.253	47.253
ruditapes_c11131	6.28	6.28	-6.28	-3.039	-4.48E-06	-3.019	-1.772	0.076	0.684	1	cathepsin l	/// 0006508 // proteolysis /// 0004197 // cysteine-type endopeptidase activity	9.359	504	123	123	9.359	9.359	3.08	504	90	90	3.08	3.08
ruditapes_lrc38631	24.139	24.139	-24.139	-3.03	-1.72E-05	-3.01	-3.47	5.21E-04	0.013	1	ribosomal protein s20	/// 0015935 // small ribosomal subunit /// 0006412 // translation /// 0003723 // RNA binding /// 0003735 // structural constituent of ribosome	36.029	380	21	357	36.029	36.029	11.89	380	11	262	11.89	11.89
ruditapes2_c4353	59.98	59.98	-59.98	-3.025	-4.28E-05	-3.005	-5.466	4.61E-08	2.61E-06	1.50E-03	tubulin polymerization-promoting protein family member 2	/// 0002119 // nematode larval development /// 0005730 // nucleolus /// 0000003 // reproduction /// 0005737 // cytoplasm	89.599	"1,115"	399	"2,605"	89.599	89.599	29.619	"1,115"	241	"1,915"	29.619	29.619
ruditapes2_c200	43.61	43.61	-43.61	-3.023	-3.11E-05	-3.003	-4.659	3.17E-06	1.36E-04	0.103	ribosomal l24 domain containing 1	/// 0042254 // ribosome biogenesis /// 0005634 // nucleus /// 0005840 // ribosome /// 0006412 // translation /// 0003735 // structural constituent of ribosome	65.167	808	741	"1,373"	65.167	65.167	21.557	808	521	"1,010"	21.557	21.557
ruditapes_lrc35970	9.789	9.789	-9.789	-3.014	-6.98E-06	-2.994	-2.205	0.027	0.336	1	angiopoietin-like 2	/// 0005576 // extracellular region	14.649	699	59	267	14.649	14.649	4.86	699	42	197	4.86	4.86
ruditapes2_lrc3545	8.005	8.005	-8.005	-3.011	-5.71E-06	-2.991	-1.993	0.046	0.488	1	fkbp-type peptidyl-prolyl cis-trans isomerase	/// 0005739 // mitochondrion /// 0005634 // nucleus /// 0000747 // conjugation with cellular fusion /// 0009092 // homoserine metabolic process /// 0005527 // macrolide binding /// 0006412 // translation /// 0005829 // cytosol /// 0006325 // chromatin organization /// 0003755 // peptidyl-prolyl cis-trans isomerase activity /// 0006457 // protein folding	11.985	624	35	195	11.985	11.985	3.98	624	27	144	3.98	3.98
ruditapes2_lrc5755	12.626	12.626	-12.626	-3	-9.00E-06	-2.98	-2.5	0.012	0.182	1	60s ribosomal protein l23	/// 0005515 // protein binding /// 0022625 // cytosolic large ribosomal subunit /// 0000022 // mitotic spindle elongation /// 0006412 // translation /// 0003735 // structural constituent of ribosome	18.94	407	0	201	18.94	18.94	6.314	407	0	149	6.314	6.314
ruditapes2_lrc4741	10.952	10.952	-10.952	-2.997	-7.81E-06	-2.977	-2.327	0.02	0.262	1	ribosomal protein l23	/// 0006414 // translational elongation /// 0006610 // ribosomal protein import into nucleus /// 0005515 // protein binding /// 0022625 // cytosolic large ribosomal subunit /// 0000022 // mitotic spindle elongation /// 0003735 // structural constituent of ribosome	16.436	434	0	186	16.436	16.436	5.484	434	0	138	5.484	5.484
ruditapes_lrc33985	7.066	7.066	-7.066	-2.975	-5.04E-06	-2.955	-1.864	0.062	0.598	1	ribosomal protein s5	/// 0006414 // translational elongation /// 0006413 // translational initiation /// 0003729 // mRNA binding /// 0006450 // regulation of translational fidelity /// 0003735 // structural constituent of ribosome /// 0022627 // cytosolic small ribosomal subunit	10.644	699	0	194	10.644	10.644	3.577	699	0	145	3.577	3.577
ruditapes2_c956	433.03	433.03	-433.03	-2.966	-3.09E-04	-2.946	-14.578	3.90E-48	1.63E-45	1.27E-43	ribosomal protein l19	/// 0006414 // translational elongation /// 0022625 // cytosolic large ribosomal subunit /// 0003723 // RNA binding /// 0003735 // structural constituent of ribosome	653.318	649	"2,125"	"11,056"	653.318	653.318	220.289	649	"2,402"	"8,290"	220.289	220.289
ruditapes_lrc33579	9.518	9.518	-9.518	-2.965	-6.78E-06	-2.945	-2.161	0.031	0.365	1	ribosomal protein l23	/// 0006414 // translational elongation /// 0006610 // ribosomal protein import into nucleus /// 0005515 // protein binding /// 0022625 // cytosolic large ribosomal subunit /// 0000022 // mitotic spindle elongation /// 0003735 // structural constituent of ribosome	14.361	470	0	176	14.361	14.361	4.843	470	0	132	4.843	4.843
ruditapes2_lrc4104	5.775	5.775	-5.775	-2.957	-4.12E-06	-2.937	-1.681	0.093	0.773	1	mitochondrial ubiquinol cytochrome c reductase complex		8.725	567	6	129	8.725	8.725	2.95	567	8	97	2.95	2.95
ruditapes_c19262	186.515	186.515	-186.515	-2.948	-1.33E-04	-2.928	-9.544	1.37E-21	2.56E-19	4.47E-17	solute carrier family anion member 1	/// 0005452 // inorganic anion exchanger activity /// 0016021 // integral to membrane /// 0006820 // anion transport /// 0030097 // hemopoiesis	282.253	642	"3,589"	"4,725"	282.253	282.253	95.738	642	"2,601"	"3,564"	95.738	95.738
ruditapes_c1897	505.58	505.58	-505.58	-2.946	-3.60E-04	-2.926	-15.711	1.28E-55	6.15E-53	4.18E-51	ribosomal protein l37	/// 0006414 // translational elongation /// 0005515 // protein binding /// 0005840 // ribosome /// 0005829 // cytosol	765.425	387	"7,724"	"7,724"	765.425	765.425	259.845	387	"5,831"	"5,831"	259.845	259.845
ruditapes2_c287	11.445	11.445	-11.445	-2.944	-8.16E-06	-2.924	-2.363	0.018	0.244	1	mitochondrial ribosomal protein s6	/// 0005739 // mitochondrion /// 0015935 // small ribosomal subunit	17.331	624	119	282	17.331	17.331	5.887	624	33	213	5.887	5.887
ruditapes_c429	7.065	7.065	-7.065	-2.941	-5.04E-06	-2.921	-1.856	0.064	0.605	1	mitochondrial ribosomal protein s18c	/// 0005763 // mitochondrial small ribosomal subunit	10.706	720	201	201	10.706	10.706	3.641	720	152	152	3.641	3.641
ruditapes_c23206	6.742	6.742	-6.742	-2.934	-4.81E-06	-2.915	-1.811	0.07	0.645	1	cyclin d3	/// 0044424 // intracellular part	10.227	480	127	128	10.227	10.227	3.485	480	97	97	3.485	3.485
ruditapes_c17007	24.712	24.712	-24.712	-2.925	-1.76E-05	-2.905	-3.463	5.34E-04	0.013	1	loc398558 protein		37.549	622	609	609	37.549	37.549	12.837	622	463	463	12.837	12.837
ruditapes2_c647	333.152	333.152	-333.152	-2.922	-2.38E-04	-2.903	-12.713	5.05E-37	1.70E-34	1.65E-32	arginine kinase	/// 0000166 // nucleotide binding /// 0016301 // kinase activity	506.463	747	"4,423"	"9,865"	506.463	506.463	173.312	747	"2,989"	"7,507"	173.312	173.312
ruditapes_c29771	8.787	8.787	-8.787	-2.91	-6.26E-06	-2.89	-2.061	0.039	0.436	1	aldo keto reductase	/// 0055114 // oxidation reduction /// 0016491 // oxidoreductase activity	13.388	656	229	229	13.388	13.388	4.601	656	175	175	4.601	4.601
ruditapes_c852	6.373	6.373	-6.373	-2.908	-4.54E-06	-2.888	-1.755	0.079	0.698	1	serine threonine-protein		9.713	537	32	136	9.713	9.713	3.34	537	51	104	3.34	3.34
ruditapes2_c4685	6.045	6.045	-6.045	-2.901	-4.31E-06	-2.882	-1.707	0.088	0.747	1	galactoside- 3		9.225	819	29	197	9.225	9.225	3.18	819	24	151	3.18	3.18
ruditapes2_lrc4239	6.904	6.904	-6.904	-2.898	-4.92E-06	-2.878	-1.824	0.068	0.634	1	translationally controlled tumor protein		10.542	"1,095"	0	301	10.542	10.542	3.638	"1,095"	0	231	3.638	3.638
ruditapes_c4804	12.776	12.776	-12.776	-2.882	-9.11E-06	-2.863	-2.476	0.013	0.192	1	transmembrane protein 103		19.564	592	240	302	19.564	19.564	6.788	592	171	233	6.788	6.788
ruditapes_c33520	39.015	39.015	-39.015	-2.88	-2.78E-05	-2.861	-4.325	1.53E-05	5.62E-04	0.498	alkaline ceramidase		59.766	428	352	667	59.766	59.766	20.751	428	245	515	20.751	20.751
ruditapes_c28006	791.366	791.366	-791.366	-2.875	-5.64E-04	-2.856	-19.471	1.96E-84	1.36E-81	6.40E-80	cytochrome c subunit ii	/// 0046914 // transition metal ion binding /// 0022900 // electron transport chain /// 0005739 // mitochondrion /// 0016020 // membrane	"1,213.35"	708	"17,753"	"22,400"	"1,213.35"	"1,213.35"	421.985	708	"14,392"	"17,324"	421.985	421.985
ruditapes2_c761	6.638	6.638	-6.638	-2.875	-4.73E-06	-2.856	-1.783	0.075	0.674	1	pol-like protein		10.178	682	141	181	10.178	10.178	3.54	682	122	140	3.54	3.54
ruditapes2_lrc4816	20.392	20.392	-20.392	-2.874	-1.45E-05	-2.855	-3.124	1.78E-03	0.038	1	apolipophorin precursor protein		31.272	856	23	698	31.272	31.272	10.879	856	25	540	10.879	10.879
ruditapes_c13966	9.204	9.204	-9.204	-2.865	-6.56E-06	-2.845	-2.096	0.036	0.411	1	repeat organellar		14.139	594	219	219	14.139	14.139	4.936	594	170	170	4.936	4.936
ruditapes2_lrc5326	52.149	52.149	-52.149	-2.864	-3.72E-05	-2.844	-4.988	6.09E-07	2.90E-05	0.02	ribosomal protein l11	/// 0006414 // translational elongation /// 0006605 // protein targeting /// 0005730 // nucleolus /// 0005515 // protein binding /// 0022625 // cytosolic large ribosomal subunit /// 0019843 // rRNA binding /// 0006364 // rRNA processing /// 0003735 // structural constituent of ribosome /// 0009790 // embryonic development /// 0042273 // ribosomal large subunit biogenesis	80.131	559	47	"1,168"	80.131	80.131	27.982	559	29	907	27.982	27.982
ruditapes_lrc33808	642.023	642.023	-642.023	-2.844	-4.58E-04	-2.825	-17.46	2.94E-68	1.62E-65	9.58E-64	alpha tubulin	/// 0005198 // structural molecule activity /// 0051258 // protein polymerization /// 0005525 // GTP binding /// 0003924 // GTPase activity /// 0043234 // protein complex /// 0005874 // microtubule /// 0007018 // microtubule-based movement	990.141	506	"2,108"	"13,064"	990.141	990.141	348.119	506	"1,882"	"10,214"	348.119	348.119
ruditapes2_lrc6086	8.955	8.955	-8.955	-2.828	-6.38E-06	-2.809	-2.057	0.04	0.439	1	alpha 3 type vi collagen isoform 1 precursor	/// 0005578 // proteinaceous extracellular matrix	13.854	609	70	220	13.854	13.854	4.899	609	31	173	4.899	4.899
ruditapes_lrc33086	12.416	12.416	-12.416	-2.828	-8.85E-06	-2.808	-2.421	0.015	0.216	1	ribosomal protein l21	/// 0005840 // ribosome /// 0006412 // translation /// 0003735 // structural constituent of ribosome	19.209	561	0	281	19.209	19.209	6.794	561	0	221	6.794	6.794
ruditapes_c6040	10.332	10.332	-10.332	-2.825	-7.36E-06	-2.806	-2.208	0.027	0.333	1	ribosomal protein l24	/// 0010458 // exit from mitosis /// 0006414 // translational elongation /// 0021554 // optic nerve development /// 0005515 // protein binding /// 0031575 // G1/S transition checkpoint /// 0022625 // cytosolic large ribosomal subunit /// 0031290 // retinal ganglion cell axon guidance /// 0000027 // ribosomal large subunit assembly /// 0060041 // retina development in camera-type eye /// 0003723 // RNA binding /// 0003735 // structural constituent of ribosome /// 0009790 // embryonic development	15.992	518	1	216	15.992	15.992	5.66	518	4	170	5.66	5.66
ruditapes_c8441	78.081	78.081	-78.081	-2.819	-5.56E-05	-2.8	-6.065	1.32E-09	9.63E-08	4.30E-05	cathepsin l precursor	/// 0006508 // proteolysis /// 0004197 // cysteine-type endopeptidase activity	121.006	818	"1,868"	"2,581"	121.006	121.006	42.925	818	"1,585"	"2,036"	42.925	42.925
ruditapes2_c399	68.312	68.312	-68.312	-2.819	-4.87E-05	-2.8	-5.673	1.40E-08	8.82E-07	4.58E-04	nicotinamide nucleotide transhydrogenase	/// 0055114 // oxidation reduction /// 0008750 // NAD(P)+ transhydrogenase (AB-specific) activity /// 0015992 // proton transport /// 0006099 // tricarboxylic acid cycle /// 0005746 // mitochondrial respiratory chain /// 0051287 // NAD or NADH binding /// 0003957 // NAD(P)+ transhydrogenase (B-specific) activity /// 0016021 // integral to membrane /// 0050661 // NADP or NADPH binding /// 0009055 // electron carrier activity	105.864	"1,127"	"1,420"	"3,111"	105.864	105.864	37.552	"1,127"	"1,277"	"2,454"	37.552	37.552
ruditapes_c31175	20.755	20.755	-20.755	-2.818	-1.48E-05	-2.799	-3.126	1.77E-03	0.037	1	in family member (ttn-1)		32.175	888	745	745	32.175	32.175	11.419	888	588	588	11.419	11.419
ruditapes_lrc34795	8.214	8.214	-8.214	-2.814	-5.85E-06	-2.795	-1.966	0.049	0.509	1	cathepsin l	/// 0006508 // proteolysis /// 0004197 // cysteine-type endopeptidase activity	12.742	933	65	310	12.742	12.742	4.529	933	38	245	4.529	4.529
ruditapes2_c318	"1,008.13"	"1,008.13"	"-1,008.13"	-2.812	-7.18E-04	-2.793	-21.779	3.79E-105	2.94E-102	1.24E-100	ribosomal protein l34a	/// 0005840 // ribosome /// 0006412 // translation /// 0003735 // structural constituent of ribosome	"1,564.60"	449	"4,396"	"18,318"	"1,564.60"	"1,564.60"	556.473	449	"3,865"	"14,488"	556.473	556.473
ruditapes2_lrc2988	10.181	10.181	-10.181	-2.785	-7.26E-06	-2.766	-2.179	0.029	0.354	1	ankyrin repeat domain 39		15.886	647	33	268	15.886	15.886	5.704	647	36	214	5.704	5.704
ruditapes_c19007	6.878	6.878	-6.878	-2.785	-4.90E-06	-2.766	-1.791	0.073	0.666	1	tyrosine recombinase		10.731	461	108	129	10.731	10.731	3.853	461	84	103	3.853	3.853
ruditapes2_c122	7.425	7.425	-7.425	-2.782	-5.29E-06	-2.764	-1.86	0.063	0.601	1	acyl- synthetase long-chain family member 1	/// 0044444 // cytoplasmic part /// 0043231 // intracellular membrane-bounded organelle /// 0016020 // membrane	11.59	857	122	259	11.59	11.59	4.166	857	92	207	4.166	4.166
ruditapes2_lrc4282	35.64	35.64	-35.64	-2.781	-2.54E-05	-2.762	-4.074	4.62E-05	1.53E-03	1	ribosomal protein l21	/// 0006414 // translational elongation /// 0022625 // cytosolic large ribosomal subunit /// 0003723 // RNA binding /// 0003735 // structural constituent of ribosome	55.652	829	421	"1,203"	55.652	55.652	20.013	829	203	962	20.013	20.013
ruditapes_lrc33836	27.483	27.483	-27.483	-2.781	-1.96E-05	-2.763	-3.578	3.46E-04	9.15E-03	1	ribosomal protein l35a	/// 0044238 // primary metabolic process /// 0010467 // gene expression /// 0044424 // intracellular part /// 0034960 // cellular biopolymer metabolic process	42.911	370	9	414	42.911	42.911	15.428	370	10	331	15.428	15.428
ruditapes_c13200	12.746	12.746	-12.746	-2.77	-9.08E-06	-2.751	-2.433	0.015	0.211	1	serine protease inhibitor 2		19.948	273	142	142	19.948	19.948	7.202	273	114	114	7.202	7.202
ruditapes2_c2079	73.177	73.177	-73.177	-2.763	-5.21E-05	-2.744	-5.822	5.81E-09	3.86E-07	1.89E-04	eukaryotic translation initiation factor subunit 5 47kda	/// 0005852 // eukaryotic translation initiation factor 3 complex /// 0006446 // regulation of translational initiation /// 0005515 // protein binding /// 0003743 // translation initiation factor activity /// 0005829 // cytosol	114.685	"1,047"	"3,131"	"3,131"	114.685	114.685	41.508	"1,047"	"2,520"	"2,520"	41.508	41.508
ruditapes2_c571	38.988	38.988	-38.988	-2.759	-2.78E-05	-2.74	-4.247	2.17E-05	7.73E-04	0.707	mitochondrial atp synthase gamma-subunit	"/// 0045261 // proton-transporting ATP synthase complex,  catalytic core F(1) /// 0046933 // hydrogen ion transporting ATP synthase activity,  rotational mechanism /// 0015986 // ATP synthesis coupled proton transport /// 0046961 // proton-transporting ATPase activity,  rotational mechanism"	61.158	718	337	"1,145"	61.158	61.158	22.17	718	310	923	22.17	22.17
ruditapes_c1115	20.981	20.981	-20.981	-2.752	-1.50E-05	-2.733	-3.112	1.86E-03	0.039	1	viral a-type inclusion protein		32.957	"1,358"	"1,081"	"1,167"	32.957	32.957	11.976	"1,358"	846	943	11.976	11.976
ruditapes2_c4845	9.366	9.366	-9.366	-2.751	-6.67E-06	-2.733	-2.079	0.038	0.422	1	ribosomal protein l26e	/// 0006414 // translational elongation /// 0005829 // cytosol	14.715	503	0	193	14.715	14.715	5.349	503	0	156	5.349	5.349
ruditapes2_c3409	78.546	78.546	-78.546	-2.748	-5.60E-05	-2.729	-6.018	1.77E-09	1.27E-07	5.77E-05	protein		123.494	795	"1,617"	"2,560"	123.494	123.494	44.947	795	"1,155"	"2,072"	44.947	44.947
ruditapes2_c4099	798.21	798.21	-798.21	-2.742	-5.69E-04	-2.724	-19.174	6.19E-82	4.04E-79	2.02E-77	60s acidic ribosomal protein p1	/// 0006414 // translational elongation /// 0005840 // ribosome /// 0003735 // structural constituent of ribosome	"1,256.39"	518	"1,024"	"16,970"	"1,256.39"	"1,256.39"	458.178	518	394	"13,762"	458.178	458.178
ruditapes2_lrc4521	7.671	7.671	-7.671	-2.74	-5.47E-06	-2.722	-1.879	0.06	0.586	1	actin	/// 0000281 // cytokinesis after mitosis /// 0040007 // growth /// 0002119 // nematode larval development /// 0005515 // protein binding /// 0030036 // actin cytoskeleton organization /// 0040035 // hermaphrodite genitalia development /// 0007517 // muscle organ development /// 0009792 // embryonic development ending in birth or egg hatching	12.079	943	27	297	12.079	12.079	4.407	943	30	241	4.407	4.407
ruditapes_lrc33006	6.867	6.867	-6.867	-2.739	-4.89E-06	-2.72	-1.777	0.076	0.679	1	galactoside- 8	/// 0005634 // nucleus /// 0005515 // protein binding /// 0030198 // extracellular matrix organization /// 0001501 // skeletal system development /// 0005737 // cytoplasm /// 0005578 // proteinaceous extracellular matrix	10.816	773	150	218	10.816	10.816	3.949	773	111	177	3.949	3.949
ruditapes_lrc33008	31.302	31.302	-31.302	-2.734	-2.23E-05	-2.716	-3.791	1.50E-04	4.44E-03	1	mitochondrial atp synthase lipid binding protein precursor	"/// 0015992 // proton transport /// 0015078 // hydrogen ion transmembrane transporter activity /// 0045263 // proton-transporting ATP synthase complex,  coupling factor F(o)"	49.35	774	52	996	49.35	49.35	18.048	774	87	810	18.048	18.048
ruditapes2_c1543	227.599	227.599	-227.599	-2.732	-1.62E-04	-2.713	-10.219	1.64E-24	3.63E-22	5.33E-20	beta 2b	/// 0005515 // protein binding /// 0000166 // nucleotide binding /// 0007017 // microtubule-based process	359.045	693	896	"6,488"	359.045	359.045	131.446	693	"1,012"	"5,282"	131.446	131.446
ruditapes2_c1920	7.441	7.441	-7.441	-2.732	-5.30E-06	-2.714	-1.848	0.065	0.612	1	chromosome 4 open reading frame 22		11.737	562	172	172	11.737	11.737	4.296	562	140	140	4.296	4.296
ruditapes_c798	9.853	9.853	-9.853	-2.718	-7.02E-06	-2.7	-2.121	0.034	0.393	1	nadh dehydrogenase 1 alpha subcomplex subunit 5	/// 0040007 // growth /// 0002119 // nematode larval development /// 0009792 // embryonic development ending in birth or egg hatching	15.588	866	143	352	15.588	15.588	5.735	866	94	288	5.735	5.735
ruditapes_lrc36503	39.171	39.171	-39.171	-2.716	-2.79E-05	-2.698	-4.229	2.35E-05	8.32E-04	0.767	ribosomal protein l4	/// 0006414 // translational elongation /// 0005515 // protein binding /// 0005840 // ribosome /// 0005829 // cytosol /// 0003735 // structural constituent of ribosome	61.998	686	11	"1,109"	61.998	61.998	22.827	686	13	908	22.827	22.827
ruditapes_c560	9.448	9.448	-9.448	-2.716	-6.73E-06	-2.698	-2.077	0.038	0.423	1	von willebrand factor c domain containing 2	/// 0005615 // extracellular space /// 0005604 // basement membrane /// 0045666 // positive regulation of neuron differentiation /// 0010811 // positive regulation of cell-substrate adhesion /// 0030514 // negative regulation of BMP signaling pathway /// 0005614 // interstitial matrix	14.953	495	193	193	14.953	14.953	5.505	495	158	158	5.505	5.505
ruditapes2_c2896	19.114	19.114	-19.114	-2.71	-1.36E-05	-2.691	-2.951	3.17E-03	0.06	1	cathepsin l-associated protein	/// 0005488 // binding /// 0009987 // cellular process /// 0044421 // extracellular region part	30.294	"1,666"	"1,059"	"1,316"	30.294	30.294	11.18	"1,666"	852	"1,080"	11.18	11.18
ruditapes_c9350	12.62	12.62	-12.62	-2.697	-8.99E-06	-2.679	-2.393	0.017	0.229	1	predicted protein [Nematostella vectensis]		20.055	937	490	490	20.055	20.055	7.436	937	404	404	7.436	7.436
ruditapes_c474	6.38	6.38	-6.38	-2.693	-4.55E-06	-2.675	-1.7	0.089	0.754	1	keratinocyte associated protein 2	/// 0018279 // protein amino acid N-linked glycosylation via asparagine /// 0008250 // oligosaccharyltransferase complex /// 0004579 // dolichyl-diphosphooligosaccharide-protein glycotransferase activity	10.147	"1,062"	134	281	10.147	10.147	3.767	"1,062"	82	232	3.767	3.767
ruditapes_c2216	22.951	22.951	-22.951	-2.688	-1.64E-05	-2.67	-3.222	1.27E-03	0.028	1	max dimerization protein 1	/// 0003700 // transcription factor activity /// 0003714 // transcription corepressor activity /// 0007275 // multicellular organismal development /// 0045449 // regulation of transcription /// 0008283 // cell proliferation /// 0005739 // mitochondrion /// 0005634 // nucleus	36.547	723	365	689	36.547	36.547	13.596	723	345	570	13.596	13.596
ruditapes_c1208	22.765	22.765	-22.765	-2.686	-1.62E-05	-2.667	-3.208	1.34E-03	0.029	1	beta-ig-h3 fasciclin		36.272	535	41	506	36.272	36.272	13.506	535	20	419	13.506	13.506
ruditapes2_lrc3105	595.795	595.795	-595.795	-2.673	-4.24E-04	-2.655	-16.382	2.59E-60	1.30E-57	8.44E-56	beta-tubulin	/// 0005198 // structural molecule activity /// 0051258 // protein polymerization /// 0005525 // GTP binding /// 0003924 // GTPase activity /// 0043234 // protein complex /// 0042267 // natural killer cell mediated cytotoxicity /// 0005874 // microtubule /// 0006928 // cell motion /// 0051082 // unfolded protein binding /// 0042288 // MHC class I protein binding /// 0007018 // microtubule-based movement	951.822	790	"14,304"	"19,607"	951.822	951.822	356.027	790	"9,071"	"16,309"	356.027	356.027
ruditapes2_lrc5470	15.637	15.637	-15.637	-2.667	-1.11E-05	-2.649	-2.65	8.04E-03	0.131	1	ubiquitin a-52 residue ribosomal protein fusion product 1	"/// 0031145 // anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process /// 0006355 // regulation of transcription,  DNA-dependent /// 0051436 // negative regulation of ubiquitin-protein ligase activity during mitotic cell cycle /// 0005811 // lipid particle /// 0006950 // response to stress /// 0006414 // translational elongation /// 0042254 // ribosome biogenesis /// 0051437 // positive regulation of ubiquitin-protein ligase activity during mitotic cell cycle /// 0005515 // protein binding /// 0005654 // nucleoplasm /// 0022625 // cytosolic large ribosomal subunit /// 0030433 // ER-associated protein catabolic process /// 0030528 // transcription regulator activity /// 0016567 // protein ubiquitination /// 0006325 // chromatin organization /// 0003735 // structural constituent of ribosome /// 0048167 // regulation of synaptic plasticity /// 0007411 // axon guidance /// 0045941 // positive regulation of transcription /// 0042062 // long-term strengthening of neuromuscular junction"	25.019	443	6	289	25.019	25.019	9.382	443	7	241	9.382	9.382
ruditapes_c8052	9.209	9.209	-9.209	-2.665	-6.56E-06	-2.647	-2.033	0.042	0.456	1	predicted protein [Nematostella vectensis]		14.742	"1,038"	397	399	14.742	14.742	5.533	"1,038"	323	333	5.533	5.533
ruditapes_c1607	5.983	5.983	-5.983	-2.66	-4.26E-06	-2.642	-1.637	0.102	0.813	1	pol-like protein		9.588	976	65	244	9.588	9.588	3.605	976	71	204	3.605	3.605
ruditapes_c17152	12.768	12.768	-12.768	-2.66	-9.10E-06	-2.642	-2.392	0.017	0.229	1	src tyrosine	/// 0040007 // growth /// 0002119 // nematode larval development /// 0008406 // gonad development /// 0005488 // binding /// 0040011 // locomotion /// 0040035 // hermaphrodite genitalia development /// 0004672 // protein kinase activity /// 0009792 // embryonic development ending in birth or egg hatching /// 0007052 // mitotic spindle organization	20.461	343	160	183	20.461	20.461	7.693	343	122	153	7.693	7.693
ruditapes2_c230	32.691	32.691	-32.691	-2.658	-2.33E-05	-2.64	-3.827	1.30E-04	3.90E-03	1	sperm associated antigen 8		52.403	846	600	"1,156"	52.403	52.403	19.712	846	465	967	19.712	19.712
ruditapes_lrc34342	384.978	384.978	-384.978	-2.654	-2.74E-04	-2.636	-13.125	2.38E-39	8.42E-37	7.75E-35	ribosomal protein s4	/// 0005840 // ribosome /// 0019843 // rRNA binding /// 0006412 // translation /// 0007420 // brain development /// 0003735 // structural constituent of ribosome /// 0009790 // embryonic development	617.703	281	499	"4,526"	617.703	617.703	232.726	281	675	"3,792"	232.726	232.726
ruditapes_lrc35286	10.316	10.316	-10.316	-2.646	-7.35E-06	-2.628	-2.145	0.032	0.376	1	activating transcription factor 4	/// 0016563 // transcription activator activity /// 0050811 // GABA receptor binding /// 0045944 // positive regulation of transcription from RNA polymerase II promoter /// 0003704 // specific RNA polymerase II transcription factor activity /// 0003677 // DNA binding /// 0005667 // transcription factor complex /// 0005737 // cytoplasm /// 0008022 // protein C-terminus binding /// 0006094 // gluconeogenesis	16.583	710	52	307	16.583	16.583	6.267	710	52	258	6.267	6.267
ruditapes_lrc38632	101.598	101.598	-101.598	-2.633	-7.24E-05	-2.615	-6.717	1.86E-11	1.60E-09	6.05E-07	nascent polypeptide-associated complex subunit alpha	/// 0003713 // transcription coactivator activity /// 0005634 // nucleus /// 0006412 // translation /// 0005854 // nascent polypeptide-associated complex /// 0017025 // TATA-binding protein binding	163.828	618	162	"2,640"	163.828	163.828	62.23	618	114	"2,230"	62.23	62.23
ruditapes_c7531	14.994	14.994	-14.994	-2.621	-1.07E-05	-2.603	-2.575	0.01	0.155	1	rgm domain member b		24.245	783	495	495	24.245	24.245	9.251	783	420	420	9.251	9.251
ruditapes2_c2074	14.247	14.247	-14.247	-2.62	-1.02E-05	-2.602	-2.509	0.012	0.178	1	mgc81827 protein		23.043	694	417	417	23.043	23.043	8.797	694	354	354	8.797	8.797
ruditapes_lrc32570	33.291	33.291	-33.291	-2.62	-2.37E-05	-2.603	-3.837	1.25E-04	3.75E-03	1	ribosomal protein l5	/// 0042254 // ribosome biogenesis /// 0005840 // ribosome /// 0006412 // translation /// 0005829 // cytosol /// 0003735 // structural constituent of ribosome /// 0008097 // 5S rRNA binding	53.835	800	76	"1,123"	53.835	53.835	20.544	800	60	953	20.544	20.544
ruditapes_lrc33600	40.862	40.862	-40.862	-2.607	-2.91E-05	-2.59	-4.241	2.22E-05	7.92E-04	0.725	malate dehydrogenase nad	/// 0030060 // L-malate dehydrogenase activity /// 0055114 // oxidation reduction /// 0006108 // malate metabolic process /// 0006099 // tricarboxylic acid cycle /// 0005488 // binding /// 0006096 // glycolysis /// 0005829 // cytosol	66.282	692	24	"1,196"	66.282	66.282	25.42	692	20	"1,020"	25.42	25.42
ruditapes_lrc12434	212.608	212.608	-212.608	-2.606	-1.51E-04	-2.588	-9.672	3.97E-22	7.61E-20	1.29E-17	ribosomal protein l6	/// 0005840 // ribosome /// 0006412 // translation /// 0003735 // structural constituent of ribosome	345.005	768	754	"6,909"	345.005	345.005	132.397	768	572	"5,896"	132.397	132.397
ruditapes2_lrc3309	6.046	6.046	-6.046	-2.606	-4.31E-06	-2.588	-1.631	0.103	0.821	1	translationally controlled tumor protein	/// 0007275 // multicellular organismal development /// 0040007 // growth /// 0005488 // binding	9.812	"1,067"	0	273	9.812	9.812	3.766	"1,067"	0	233	3.766	3.766
ruditapes2_c2343	10.828	10.828	-10.828	-2.604	-7.71E-06	-2.586	-2.182	0.029	0.352	1	PREDICTED: hypothetical protein [Homo sapiens]		17.58	613	241	281	17.58	17.58	6.752	613	201	240	6.752	6.752
ruditapes_c305	14.801	14.801	-14.801	-2.596	-1.05E-05	-2.579	-2.547	0.011	0.165	1	dynein light chain roadblock-type 2	/// 0005868 // cytoplasmic dynein complex /// 0005515 // protein binding /// 0005737 // cytoplasm /// 0005874 // microtubule /// 0003777 // microtubule motor activity /// 0007018 // microtubule-based movement	24.074	822	278	516	24.074	24.074	9.273	822	259	442	9.273	9.273
ruditapes2_lrc3767	77.067	77.067	-77.067	-2.596	-5.49E-05	-2.579	-5.813	6.14E-09	4.06E-07	2.00E-04	protein	/// 0005524 // ATP binding /// 0005856 // cytoskeleton /// 0005515 // protein binding /// 0005737 // cytoplasm	125.349	"1,188"	"1,622"	"3,883"	125.349	125.349	48.282	"1,188"	"1,235"	"3,326"	48.282	48.282
ruditapes2_c312	24.183	24.183	-24.183	-2.594	-1.72E-05	-2.577	-3.255	1.13E-03	0.026	1	isocitrate dehydrogenase 2 (nadp+) mitochondrial	/// 0055114 // oxidation reduction /// 0005739 // mitochondrion /// 0030145 // manganese ion binding /// 0006099 // tricarboxylic acid cycle /// 0004450 // isocitrate dehydrogenase (NADP+) activity /// 0006097 // glyoxylate cycle /// 0000287 // magnesium ion binding /// 0006102 // isocitrate metabolic process	39.35	921	179	945	39.35	39.35	15.167	921	141	810	15.167	15.167
ruditapes_lrc34251	28.281	28.281	-28.281	-2.589	-2.01E-05	-2.572	-3.517	4.37E-04	0.011	1	nucleoside diphosphate kinase	/// 0005524 // ATP binding /// 0007424 // open tracheal system development /// 0006468 // protein amino acid phosphorylation /// 0006183 // GTP biosynthetic process /// 0006241 // CTP biosynthetic process /// 0004550 // nucleoside diphosphate kinase activity /// 0006228 // UTP biosynthetic process	46.077	814	145	978	46.077	46.077	17.797	814	215	840	17.797	17.797
ruditapes2_c3526	57.791	57.791	-57.791	-2.588	-4.12E-05	-2.57	-5.026	5.01E-07	2.42E-05	0.016	protein		94.192	831	546	"2,041"	94.192	94.192	36.401	831	413	"1,754"	36.401	36.401
ruditapes_lrc34813	17.909	17.909	-17.909	-2.585	-1.28E-05	-2.568	-2.797	5.16E-03	0.09	1	nucleoside diphosphate kinase	/// 0005524 // ATP binding /// 0006183 // GTP biosynthetic process /// 0006241 // CTP biosynthetic process /// 0004550 // nucleoside diphosphate kinase activity /// 0006228 // UTP biosynthetic process	29.207	864	569	658	29.207	29.207	11.298	864	405	566	11.298	11.298
ruditapes_c8603	29.953	29.953	-29.953	-2.584	-2.13E-05	-2.567	-3.616	2.99E-04	8.10E-03	1	transposase		48.864	777	990	990	48.864	48.864	18.91	777	852	852	18.91	18.91
ruditapes2_lrc4851	176.851	176.851	-176.851	-2.577	-1.26E-04	-2.56	-8.776	1.69E-18	2.53E-16	5.51E-14	ribosomal protein s27a	/// 0031145 // anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process /// 0051436 // negative regulation of ubiquitin-protein ligase activity during mitotic cell cycle /// 0006414 // translational elongation /// 0046872 // metal ion binding /// 0051437 // positive regulation of ubiquitin-protein ligase activity during mitotic cell cycle /// 0005515 // protein binding /// 0005654 // nucleoplasm /// 0030433 // ER-associated protein catabolic process /// 0030528 // transcription regulator activity /// 0016567 // protein ubiquitination /// 0003735 // structural constituent of ribosome /// 0048167 // regulation of synaptic plasticity /// 0022627 // cytosolic small ribosomal subunit /// 0007411 // axon guidance /// 0045941 // positive regulation of transcription /// 0042062 // long-term strengthening of neuromuscular junction	288.983	510	780	"3,843"	288.983	288.983	112.131	510	417	"3,316"	112.131	112.131
ruditapes2_c268	73.203	73.203	-73.203	-2.576	-5.21E-05	-2.558	-5.645	1.66E-08	1.03E-06	5.40E-04	calponin transgelin	/// 0003779 // actin binding /// 0031032 // actomyosin structure organization	119.661	624	"1,478"	"1,947"	119.661	119.661	46.459	624	"1,119"	"1,681"	46.459	46.459
ruditapes_c3448	10.767	10.767	-10.767	-2.576	-7.67E-06	-2.559	-2.165	0.03	0.362	1	kallikrein plasma (fletcher factor) 1		17.599	"1,131"	190	519	17.599	17.599	6.831	"1,131"	66	448	6.831	6.831
ruditapes_lrc25599	7.126	7.126	-7.126	-2.576	-5.08E-06	-2.559	-1.761	0.078	0.692	1	ppia protein	/// 0016853 // isomerase activity	11.647	866	5	263	11.647	11.647	4.521	866	4	227	4.521	4.521
ruditapes_lrc21440	7.134	7.134	-7.134	-2.575	-5.08E-06	-2.558	-1.762	0.078	0.692	1	ribosomal protein l40	"/// 0006511 // ubiquitin-dependent protein catabolic process /// 0006355 // regulation of transcription,  DNA-dependent /// 0005811 // lipid particle /// 0006950 // response to stress /// 0042254 // ribosome biogenesis /// 0005634 // nucleus /// 0005515 // protein binding /// 0022625 // cytosolic large ribosomal subunit /// 0006412 // translation /// 0006325 // chromatin organization /// 0003735 // structural constituent of ribosome /// 0006464 // protein modification process"	11.664	217	0	66	11.664	11.664	4.53	217	0	57	4.53	4.53
ruditapes_lrc34778	15.384	15.384	-15.384	-2.573	-1.10E-05	-2.556	-2.586	9.70E-03	0.151	1	activating transcription factor 4	/// 0016563 // transcription activator activity /// 0050811 // GABA receptor binding /// 0045944 // positive regulation of transcription from RNA polymerase II promoter /// 0003704 // specific RNA polymerase II transcription factor activity /// 0003677 // DNA binding /// 0005667 // transcription factor complex /// 0005737 // cytoplasm /// 0008022 // protein C-terminus binding /// 0006094 // gluconeogenesis	25.164	730	114	479	25.164	25.164	9.78	730	90	414	9.78	9.78
ruditapes_lrc32772	7.105	7.105	-7.105	-2.573	-5.06E-06	-2.556	-1.758	0.079	0.695	1	ribosomal protein l35a	/// 0006414 // translational elongation /// 0005515 // protein binding /// 0005840 // ribosome /// 0006364 // rRNA processing /// 0005829 // cytosol /// 0003735 // structural constituent of ribosome /// 0000049 // tRNA binding /// 0042273 // ribosomal large subunit biogenesis	11.621	462	0	140	11.621	11.621	4.517	462	0	121	4.517	4.517
ruditapes_c4254	7.232	7.232	-7.232	-2.567	-5.15E-06	-2.549	-1.771	0.077	0.684	1	prolyl-trna synthetase associated region		11.847	751	63	232	11.847	11.847	4.616	751	61	201	4.616	4.616
ruditapes_lrc39062	156.058	156.058	-156.058	-2.567	-1.11E-04	-2.549	-8.228	1.90E-16	2.49E-14	6.19E-12	ribosomal protein l32	/// 0005840 // ribosome /// 0006412 // translation /// 0003735 // structural constituent of ribosome	255.67	384	139	"2,560"	255.67	255.67	99.612	384	137	"2,218"	99.612	99.612
ruditapes_c15407	10.733	10.733	-10.733	-2.564	-7.64E-06	-2.547	-2.157	0.031	0.368	1	mrna turnover protein 4 homolog	/// 0042254 // ribosome biogenesis /// 0005634 // nucleus /// 0005840 // ribosome	17.595	837	384	384	17.595	17.595	6.861	837	333	333	6.861	6.861
ruditapes_lrc8076	11.328	11.328	-11.328	-2.564	-8.07E-06	-2.546	-2.216	0.027	0.329	1	trove domain protein	/// 0040010 // positive regulation of growth rate /// 0003723 // RNA binding /// 0044424 // intracellular part	18.573	"1,464"	233	709	18.573	18.573	7.245	"1,464"	155	615	7.245	7.245
ruditapes_c12158	6.827	6.827	-6.827	-2.56	-4.86E-06	-2.543	-1.719	0.086	0.736	1	adenylate cyclase	/// 0016020 // membrane /// 0016829 // lyase activity	11.203	469	137	137	11.203	11.203	4.376	469	119	119	4.376	4.376
ruditapes_c2527	19.624	19.624	-19.624	-2.56	-1.40E-05	-2.543	-2.914	3.57E-03	0.066	1	tandem repeat galectin	/// 0005529 // sugar binding	32.203	680	389	571	32.203	32.203	12.579	680	307	496	12.579	12.579
ruditapes2_lrc5371	83.258	83.258	-83.258	-2.559	-5.93E-05	-2.542	-6.002	1.95E-09	1.38E-07	6.37E-05	nucleoside diphosphate kinase	/// 0005524 // ATP binding /// 0007424 // open tracheal system development /// 0006468 // protein amino acid phosphorylation /// 0006183 // GTP biosynthetic process /// 0006241 // CTP biosynthetic process /// 0004550 // nucleoside diphosphate kinase activity /// 0006228 // UTP biosynthetic process	136.654	790	597	"2,815"	136.654	136.654	53.396	790	670	"2,446"	53.396	53.396
ruditapes2_c3305	51.936	51.936	-51.936	-2.556	-3.70E-05	-2.539	-4.738	2.16E-06	9.48E-05	0.07	protein		85.304	798	294	"1,775"	85.304	85.304	33.368	798	223	"1,544"	33.368	33.368
ruditapes_lrc33589	140.251	140.251	-140.251	-2.543	-9.99E-05	-2.526	-7.767	8.05E-15	9.34E-13	2.63E-10	beta 2c	/// 0005198 // structural molecule activity /// 0051258 // protein polymerization /// 0005525 // GTP binding /// 0003924 // GTPase activity /// 0043234 // protein complex /// 0042267 // natural killer cell mediated cytotoxicity /// 0005874 // microtubule /// 0006928 // cell motion /// 0051082 // unfolded protein binding /// 0042288 // MHC class I protein binding /// 0007018 // microtubule-based movement	231.134	856	"3,186"	"5,159"	231.134	231.134	90.883	856	"2,048"	"4,511"	90.883	90.883
ruditapes_c17608	"5,839.05"	"5,839.05"	"-5,839.05"	-2.542	-4.16E-03	-2.525	-50.24	0	0	0	nadh dehydrogenase subunit 6	/// 0044464 // cell part	"9,626.47"	558	"140,037"	"140,065"	"9,626.47"	"9,626.47"	"3,787.42"	558	"122,529"	"122,545"	"3,787.42"	"3,787.42"
ruditapes_c7540	7.764	7.764	-7.764	-2.538	-5.53E-06	-2.521	-1.826	0.068	0.632	1	bactericidal permeability increasing protein		12.811	"1,377"	409	460	12.811	12.811	5.047	"1,377"	353	403	5.047	5.047
ruditapes2_c60	6.328	6.328	-6.328	-2.536	-4.51E-06	-2.519	-1.648	0.099	0.803	1	nadh dehydrogenase 1 beta subcomplex 9		10.446	804	129	219	10.446	10.446	4.118	804	69	192	4.118	4.118
ruditapes2_c3215	8.351	8.351	-8.351	-2.534	-5.95E-06	-2.517	-1.892	0.059	0.574	1	nadh dehydrogenase flavoprotein 2	"/// 0006120 // mitochondrial electron transport,  NADH to ubiquinone /// 0046872 // metal ion binding /// 0007399 // nervous system development /// 0008137 // NADH dehydrogenase (ubiquinone) activity /// 0005747 // mitochondrial respiratory chain complex I /// 0048738 // cardiac muscle tissue development /// 0009055 // electron carrier activity /// 0051536 // iron-sulfur cluster binding"	13.796	909	146	327	13.796	13.796	5.445	909	163	287	5.445	5.445
ruditapes_c7131	8.704	8.704	-8.704	-2.533	-6.20E-06	-2.516	-1.931	0.053	0.541	1	gamma-aminobutyric acid receptor-associated protein	/// 0005794 // Golgi apparatus /// 0015031 // protein transport /// 0005875 // microtubule associated complex /// 0005886 // plasma membrane /// 0015629 // actin cytoskeleton /// 0005764 // lysosome /// 0005874 // microtubule /// 0008017 // microtubule binding /// 0000226 // microtubule cytoskeleton organization /// 0004872 // receptor activity	14.381	568	145	213	14.381	14.381	5.678	568	122	187	5.678	5.678
ruditapes2_lrc5397	235.955	235.955	-235.955	-2.526	-1.68E-04	-2.509	-10.043	9.87E-24	2.09E-21	3.22E-19	ribosomal protein l27	/// 0006414 // translational elongation /// 0005840 // ribosome /// 0005829 // cytosol /// 0003735 // structural constituent of ribosome	390.529	486	"1,310"	"4,949"	390.529	390.529	154.573	486	914	"4,356"	154.573	154.573
ruditapes_c28442	17.772	17.772	-17.772	-2.524	-1.27E-05	-2.507	-2.755	5.87E-03	0.1	1	chaperonin containing subunit 4	/// 0005524 // ATP binding /// 0005811 // lipid particle /// 0042470 // melanosome /// 0051082 // unfolded protein binding /// 0006457 // protein folding	29.432	602	462	462	29.432	29.432	11.66	602	407	407	11.66	11.66
ruditapes_lrc32804	32.088	32.088	-32.088	-2.521	-2.29E-05	-2.504	-3.699	2.16E-04	6.12E-03	1	rna-binding expressed		53.184	318	63	441	53.184	53.184	21.096	318	82	389	21.096	21.096
ruditapes2_c6512	7.985	7.985	-7.985	-2.519	-5.69E-06	-2.502	-1.845	0.065	0.614	1	agrin		13.239	617	160	213	13.239	13.239	5.255	617	118	188	5.255	5.255
ruditapes2_c3343	35.19	35.19	-35.19	-2.518	-2.51E-05	-2.501	-3.872	1.08E-04	3.29E-03	1	calponin-like protein		58.37	"1,113"	82	"1,694"	58.37	58.37	23.18	"1,113"	106	"1,496"	23.18	23.18
ruditapes2_c134	8.627	8.627	-8.627	-2.513	-6.14E-06	-2.496	-1.915	0.055	0.555	1	trove domain member 2		14.329	"2,093"	266	782	14.329	14.329	5.702	"2,093"	265	692	5.702	5.702
ruditapes2_lrc3839	100.517	100.517	-100.517	-2.511	-7.16E-05	-2.494	-6.536	6.34E-11	5.22E-09	2.07E-06	histone	/// 0005811 // lipid particle /// 0005634 // nucleus /// 0006334 // nucleosome assembly /// 0003677 // DNA binding /// 0005700 // polytene chromosome /// 0000786 // nucleosome	167.03	712	23	"3,101"	167.03	167.03	66.512	712	25	"2,746"	66.512	66.512
ruditapes2_c865	12.653	12.653	-12.653	-2.505	-9.01E-06	-2.488	-2.316	0.021	0.268	1	vacuolar atp synthase 16 kda proteolipid subunit	"/// 0005774 // vacuolar membrane /// 0015986 // ATP synthesis coupled proton transport /// 0016021 // integral to membrane /// 0033179 // proton-transporting V-type ATPase,  V0 domain /// 0015078 // hydrogen ion transmembrane transporter activity /// 0060059 // embryonic retina morphogenesis in camera-type eye"	21.059	"1,832"	891	"1,006"	21.059	21.059	8.406	"1,832"	707	893	8.406	8.406
ruditapes_c1528	91.345	91.345	-91.345	-2.496	-6.50E-05	-2.48	-6.212	5.22E-10	3.99E-08	1.70E-05	heat shock protein 90	/// 0005515 // protein binding /// 0009987 // cellular process /// 0005622 // intracellular	152.389	908	827	"3,608"	152.389	152.389	61.044	908	962	"3,214"	61.044	61.044
ruditapes_lrc36173	95.424	95.424	-95.424	-2.485	-6.80E-05	-2.468	-6.336	2.37E-10	1.83E-08	7.71E-06	60s ribosomal protein l7	/// 0007275 // multicellular organismal development /// 0040007 // growth /// 0015934 // large ribosomal subunit /// 0030528 // transcription regulator activity /// 0006412 // translation /// 0003735 // structural constituent of ribosome	159.674	532	93	"2,215"	159.674	159.674	64.25	532	79	"1,982"	64.25	64.25
ruditapes_c3586	8.246	8.246	-8.246	-2.483	-5.87E-06	-2.466	-1.861	0.063	0.6	1	nadh dehydrogenase 1 beta 19kda	/// 0044444 // cytoplasmic part /// 0043231 // intracellular membrane-bounded organelle	13.806	825	25	297	13.806	13.806	5.56	825	21	266	5.56	5.56
ruditapes2_c5063	7.3	7.3	-7.3	-2.48	-5.20E-06	-2.463	-1.75	0.08	0.702	1	serine protease inhibitor 2		12.233	395	4	126	12.233	12.233	4.934	395	7	113	4.934	4.934
ruditapes_lrc35753	49.041	49.041	-49.041	-2.478	-3.49E-05	-2.461	-4.535	5.75E-06	2.33E-04	0.188	h+ transporting f1 atp synthase epsilon subunit	"/// 0000275 // mitochondrial proton-transporting ATP synthase complex,  catalytic core F(1) /// 0046933 // hydrogen ion transporting ATP synthase activity,  rotational mechanism /// 0015986 // ATP synthesis coupled proton transport /// 0046961 // proton-transporting ATPase activity,  rotational mechanism"	82.223	382	42	819	82.223	82.223	33.182	382	67	735	33.182	33.182
ruditapes2_lrc4130	19.046	19.046	-19.046	-2.468	-1.36E-05	-2.451	-2.82	4.80E-03	0.085	1	mitochondrial atp synthase lipid binding protein precursor	"/// 0006811 // ion transport /// 0033177 // proton-transporting two-sector ATPase complex,  proton-transporting domain"	32.024	691	111	577	32.024	32.024	12.978	691	109	520	12.978	12.978
ruditapes_c527	418.936	418.936	-418.936	-2.462	-2.98E-04	-2.446	-13.216	7.09E-40	2.54E-37	2.31E-35	ribosomal protein l15	/// 0006414 // translational elongation /// 0005840 // ribosome /// 0005829 // cytosol /// 0003723 // RNA binding /// 0003735 // structural constituent of ribosome	705.456	790	"2,424"	"14,532"	705.456	705.456	286.52	790	837	"13,125"	286.52	286.52
ruditapes_c9435	15.698	15.698	-15.698	-2.461	-1.12E-05	-2.444	-2.557	0.011	0.162	1	hairy and enhancer of split	/// 0048667 // cell morphogenesis involved in neuron differentiation /// 0021983 // pituitary gland development /// 0042668 // auditory receptor cell fate determination /// 0008284 // positive regulation of cell proliferation /// 0005634 // nucleus /// 0001701 // in utero embryonic development /// 0021575 // hindbrain morphogenesis /// 0045608 // negative regulation of auditory receptor cell differentiation /// 0046982 // protein heterodimerization activity /// 0050768 // negative regulation of neurogenesis /// 0001889 // liver development /// 0003677 // DNA binding /// 0010552 // positive regulation of specific transcription from RNA polymerase II promoter /// 0021557 // oculomotor nerve development /// 0005737 // cytoplasm /// 0030324 // lung development /// 0016564 // transcription repressor activity /// 0021558 // trochlear nerve development /// 0060164 // regulation of timing of neuron differentiation /// 0048469 // cell maturation /// 0007155 // cell adhesion /// 0007219 // Notch signaling pathway /// 0010553 // negative regulation of specific transcription from RNA polymerase II promoter /// 0021555 // midbrain-hindbrain boundary morphogenesis /// 0030901 // midbrain development /// 0048635 // negative regulation of muscle development	26.443	"1,430"	499	986	26.443	26.443	10.745	"1,430"	632	891	10.745	10.745
ruditapes2_c32	50.234	50.234	-50.234	-2.46	-3.58E-05	-2.443	-4.573	4.80E-06	1.98E-04	0.156	atp synthase d chain	/// 0005811 // lipid particle	84.648	888	639	"1,960"	84.648	84.648	34.414	888	602	"1,772"	34.414	34.414
ruditapes_s33824	6.945	6.945	-6.945	-2.459	-4.95E-06	-2.443	-1.7	0.089	0.754	1	ribosomal protein s17	/// 0006414 // translational elongation /// 0034101 // erythrocyte homeostasis /// 0006413 // translational initiation /// 0042274 // ribosomal small subunit biogenesis /// 0006364 // rRNA processing /// 0003735 // structural constituent of ribosome /// 0022627 // cytosolic small ribosomal subunit	11.704	308	0	94	11.704	11.704	4.759	308	0	85	4.759	4.759
ruditapes2_c932	30.809	30.809	-30.809	-2.455	-2.19E-05	-2.438	-3.578	3.46E-04	9.15E-03	1	tubulin alpha 3	/// 0005200 // structural constituent of cytoskeleton /// 0051258 // protein polymerization /// 0005525 // GTP binding /// 0003924 // GTPase activity /// 0043234 // protein complex /// 0005874 // microtubule /// 0000226 // microtubule cytoskeleton organization /// 0007018 // microtubule-based movement	51.983	979	467	"1,327"	51.983	51.983	21.174	979	617	"1,202"	21.174	21.174
ruditapes_c15181	6.841	6.841	-6.841	-2.444	-4.87E-06	-2.428	-1.682	0.092	0.772	1	phosphopyruvate hydratase	/// 0044464 // cell part	11.578	477	144	144	11.578	11.578	4.736	477	131	131	4.736	4.736
ruditapes_lrc26308	7.757	7.757	-7.757	-2.439	-5.52E-06	-2.423	-1.79	0.073	0.667	1	ribosomal protein l35a	/// 0006414 // translational elongation /// 0005515 // protein binding /// 0005840 // ribosome /// 0006364 // rRNA processing /// 0005829 // cytosol /// 0003735 // structural constituent of ribosome /// 0000049 // tRNA binding /// 0042273 // ribosomal large subunit biogenesis	13.147	528	7	181	13.147	13.147	5.389	528	9	165	5.389	5.389
ruditapes_c691	9.961	9.961	-9.961	-2.434	-7.09E-06	-2.418	-2.026	0.043	0.461	1	spi1_craviserine protease inhibitor cvsi-1 precursor		16.908	499	181	220	16.908	16.908	6.947	499	91	201	6.947	6.947
ruditapes2_c295	7.156	7.156	-7.156	-2.419	-5.09E-06	-2.403	-1.712	0.087	0.742	1	phospholipase b1	/// 0016787 // hydrolase activity	12.199	896	285	285	12.199	12.199	5.043	896	262	262	5.043	5.043
ruditapes_c11596	160.505	160.505	-160.505	-2.416	-1.14E-04	-2.4	-8.103	5.37E-16	6.74E-14	1.75E-11	predicted protein [Nematostella vectensis]		273.821	736	"4,858"	"5,255"	273.821	273.821	113.316	736	"4,403"	"4,836"	113.316	113.316
ruditapes_c9410	7.01	7.01	-7.01	-2.41	-4.99E-06	-2.394	-1.691	0.091	0.764	1	PREDICTED: hypothetical protein [Strongylocentrotus purpuratus]		11.981	"1,242"	386	388	11.981	11.981	4.971	"1,242"	356	358	4.971	4.971
ruditapes_lrc15708	537.862	537.862	-537.862	-2.409	-3.83E-04	-2.393	-14.812	1.23E-49	5.26E-47	4.00E-45	beta-tubulin	/// 0005198 // structural molecule activity /// 0051258 // protein polymerization /// 0005525 // GTP binding /// 0003924 // GTPase activity /// 0043234 // protein complex /// 0042267 // natural killer cell mediated cytotoxicity /// 0005874 // microtubule /// 0006928 // cell motion /// 0051082 // unfolded protein binding /// 0042288 // MHC class I protein binding /// 0007018 // microtubule-based movement	919.609	715	"12,361"	"17,145"	919.609	919.609	381.746	715	"8,998"	"15,827"	381.746	381.746
ruditapes2_c1656	48.704	48.704	-48.704	-2.409	-3.47E-05	-2.392	-4.456	8.36E-06	3.30E-04	0.272	mitochondrial processing peptidase beta subunit	"/// 0005811 // lipid particle /// 0006122 // mitochondrial electron transport,  ubiquinol to cytochrome c /// 0046872 // metal ion binding /// 0005750 // mitochondrial respiratory chain complex III /// 0016485 // protein processing /// 0008121 // ubiquinol-cytochrome-c reductase activity /// 0017087 // mitochondrial processing peptidase complex"	83.279	"1,032"	"2,241"	"2,241"	83.279	83.279	34.575	"1,032"	"2,069"	"2,069"	34.575	34.575
ruditapes2_c92	56.167	56.167	-56.167	-2.401	-4.00E-05	-2.385	-4.777	1.78E-06	7.97E-05	0.058	ribosomal protein s16	/// 0005811 // lipid particle /// 0006414 // translational elongation /// 0005515 // protein binding /// 0042274 // ribosomal small subunit biogenesis /// 0000022 // mitotic spindle elongation /// 0006364 // rRNA processing /// 0003723 // RNA binding /// 0003735 // structural constituent of ribosome /// 0022627 // cytosolic small ribosomal subunit	96.258	502	1	"1,260"	96.258	96.258	40.091	502	0	"1,167"	40.091	40.091
ruditapes_c2295	21.43	21.43	-21.43	-2.393	-1.53E-05	-2.377	-2.946	3.22E-03	0.061	1	ferritin	/// 0055114 // oxidation reduction /// 0004322 // ferroxidase activity /// 0006826 // iron ion transport /// 0006879 // cellular iron ion homeostasis /// 0005737 // cytoplasm /// 0008199 // ferric iron binding	36.809	970	328	931	36.809	36.809	15.379	970	293	865	15.379	15.379
ruditapes2_c3295	51.058	51.058	-51.058	-2.392	-3.63E-05	-2.376	-4.546	5.46E-06	2.22E-04	0.178	cytochrome c oxidase subunit iv		87.729	546	403	"1,249"	87.729	87.729	36.671	546	410	"1,161"	36.671	36.671
ruditapes_c33910	9.545	9.545	-9.545	-2.385	-6.79E-06	-2.369	-1.963	0.05	0.511	1	histone h2a	/// 0005694 // chromosome	16.436	896	173	384	16.436	16.436	6.891	896	183	358	6.891	6.891
ruditapes_lrc33602	55.897	55.897	-55.897	-2.382	-3.98E-05	-2.366	-4.747	2.07E-06	9.13E-05	0.067	aplp_locmi ame: full=apolipophorins contains: ame: full=apolipophorin-2 ame: full=apolipophorin ii ame: full=apolp-2 contains: ame: full=apolipophorin-1 ame: full=apolipophorin i ame: full=apolp-1 flags: precursor		96.334	670	113	"1,683"	96.334	96.334	40.437	670	93	"1,571"	40.437	40.437
ruditapes2_c3436	13.615	13.615	-13.615	-2.379	-9.69E-06	-2.363	-2.341	0.019	0.255	1	tetraspanin 3	/// 0016020 // membrane	23.486	774	376	474	23.486	23.486	9.871	774	345	443	9.871	9.871
ruditapes_lrc16425	12.767	12.767	-12.767	-2.375	-9.09E-06	-2.359	-2.265	0.024	0.297	1	ribosomal protein s2	/// 0006414 // translational elongation /// 0005730 // nucleolus /// 0005654 // nucleoplasm /// 0048604 // fibroblast growth factor 3 binding /// 0003735 // structural constituent of ribosome /// 0022627 // cytosolic small ribosomal subunit /// 0048602 // fibroblast growth factor 1 binding	22.049	654	27	376	22.049	22.049	9.282	654	24	352	9.282	9.282
ruditapes2_lrc3937	29.545	29.545	-29.545	-2.374	-2.10E-05	-2.358	-3.445	5.72E-04	0.014	1	s-adenosylhomocysteine hydrolase		51.048	"1,045"	66	"1,391"	51.048	51.048	21.504	"1,045"	132	"1,303"	21.504	21.504
ruditapes2_lrc5040	13.275	13.275	-13.275	-2.373	-9.45E-06	-2.357	-2.308	0.021	0.272	1	ferritin	/// 0005488 // binding	22.944	931	51	557	22.944	22.944	9.669	931	54	522	9.669	9.669
ruditapes_c5534	6.65	6.65	-6.65	-2.37	-4.73E-06	-2.354	-1.633	0.103	0.82	1	eukaryotic translation initiation factor subunit e	/// 0005634 // nucleus /// 0005515 // protein binding /// 0006412 // translation /// 0003743 // translation initiation factor activity /// 0005829 // cytosol	11.505	650	176	195	11.505	11.505	4.855	650	154	183	4.855	4.855
ruditapes2_c1376	12.822	12.822	-12.822	-2.366	-9.13E-06	-2.35	-2.265	0.024	0.297	1	alpha tubulin		22.212	461	211	267	22.212	22.212	9.39	461	216	251	9.39	9.39
ruditapes_lrc36178	7.329	7.329	-7.329	-2.363	-5.22E-06	-2.347	-1.711	0.087	0.742	1	mitochondrial atp synthase coupling factor 6	/// 0015992 // proton transport /// 0005753 // mitochondrial proton-transporting ATP synthase complex /// 0015078 // hydrogen ion transmembrane transporter activity	12.707	667	45	221	12.707	12.707	5.378	667	30	208	5.378	5.378
ruditapes_c2601	15.981	15.981	-15.981	-2.36	-1.14E-05	-2.344	-2.526	0.012	0.173	1	foot protein-4 variant-1		27.73	455	329	329	27.73	27.73	11.75	455	310	310	11.75	11.75
ruditapes_lrc33418	7.818	7.818	-7.818	-2.356	-5.56E-06	-2.34	-1.765	0.078	0.69	1	mitochondrial atp synthase coupling factor 6	/// 0015992 // proton transport /// 0003824 // catalytic activity /// 0005753 // mitochondrial proton-transporting ATP synthase complex /// 0015078 // hydrogen ion transmembrane transporter activity	13.584	655	27	232	13.584	13.584	5.766	655	12	219	5.766	5.766
ruditapes_c4090	12.383	12.383	-12.383	-2.349	-8.81E-06	-2.333	-2.218	0.027	0.327	1	axonemal dynein light chain p33		21.562	"1,366"	330	768	21.562	21.562	9.178	"1,366"	335	727	9.178	9.178
ruditapes2_c64	11.671	11.671	-11.671	-2.346	-8.31E-06	-2.331	-2.152	0.031	0.371	1	family with sequence similarity member a		20.338	577	257	306	20.338	20.338	8.668	577	210	290	8.668	8.668
ruditapes_s38880	12.743	12.743	-12.743	-2.345	-9.07E-06	-2.33	-2.248	0.025	0.307	1	elongation factor 1 beta		22.214	366	106	212	22.214	22.214	9.471	366	67	201	9.471	9.471
ruditapes_c11798	8.512	8.512	-8.512	-2.34	-6.06E-06	-2.324	-1.835	0.067	0.623	1	rna-binding partial		14.864	467	181	181	14.864	14.864	6.352	467	171	172	6.352	6.352
ruditapes2_c202	"3,385.74"	"3,385.74"	"-3,385.74"	-2.338	-2.41E-03	-2.322	-36.641	7.68E-294	1.14E-290	2.51E-289	cytochrome c subunit ii	/// 0046914 // transition metal ion binding /// 0022900 // electron transport chain /// 0005739 // mitochondrion /// 0016020 // membrane	"5,916.35"	895	"103,389"	"138,072"	"5,916.35"	"5,916.35"	"2,530.62"	895	"110,865"	"131,331"	"2,530.62"	"2,530.62"
ruditapes2_c2382	9.308	9.308	-9.308	-2.338	-6.62E-06	-2.322	-1.918	0.055	0.552	1	orf msv234 hypthetical protein		16.266	580	245	246	16.266	16.266	6.958	580	228	234	6.958	6.958
ruditapes_c16036	9.134	9.134	-9.134	-2.337	-6.50E-06	-2.321	-1.899	0.058	0.567	1	fch domain only 2		15.967	795	168	331	15.967	15.967	6.833	795	216	315	6.833	6.833
ruditapes2_c255	407.885	407.885	-407.885	-2.33	-2.90E-04	-2.314	-12.674	8.22E-37	2.71E-34	2.68E-32	ribosomal protein l36a	/// 0042221 // response to chemical stimulus /// 0005840 // ribosome /// 0006412 // translation /// 0003735 // structural constituent of ribosome	714.617	355	"6,615"	"6,615"	714.617	714.617	306.731	355	"6,314"	"6,314"	306.731	306.731
ruditapes_lrc34578	31.935	31.935	-31.935	-2.326	-2.27E-05	-2.311	-3.543	3.96E-04	0.01	1	ribosomal protein l5	/// 0005840 // ribosome /// 0006412 // translation /// 0003735 // structural constituent of ribosome /// 0008097 // 5S rRNA binding	56.013	621	3	907	56.013	56.013	24.077	621	3	867	24.077	24.077
ruditapes2_lrc4214	18.63	18.63	-18.63	-2.315	-1.33E-05	-2.299	-2.699	6.96E-03	0.116	1	atp binding		32.798	891	471	762	32.798	32.798	14.168	891	339	732	14.168	14.168
ruditapes2_lrc3296	74.038	74.038	-74.038	-2.303	-5.27E-05	-2.287	-5.365	8.08E-08	4.45E-06	2.64E-03	ribosomal protein s13	/// 0005840 // ribosome /// 0006412 // translation /// 0003735 // structural constituent of ribosome	130.861	"1,014"	171	"3,460"	130.861	130.861	56.823	"1,014"	138	"3,341"	56.823	56.823
ruditapes2_c40	932.888	932.888	-932.888	-2.303	-6.64E-04	-2.287	-19.053	6.32E-81	4.04E-78	2.06E-76	ribosomal protein s28	/// 0006414 // translational elongation /// 0005515 // protein binding /// 0042274 // ribosomal small subunit biogenesis /// 0006364 // rRNA processing /// 0003735 // structural constituent of ribosome /// 0022627 // cytosolic small ribosomal subunit	"1,648.95"	309	"13,286"	"13,286"	"1,648.95"	"1,648.95"	716.061	309	"12,830"	"12,830"	716.061	716.061
ruditapes2_lrc5145	28.71	28.71	-28.71	-2.302	-2.04E-05	-2.286	-3.34	8.38E-04	0.02	1	ferritin	/// 0006826 // iron ion transport /// 0016491 // oxidoreductase activity /// 0006879 // cellular iron ion homeostasis /// 0008199 // ferric iron binding	50.768	559	104	740	50.768	50.768	22.059	559	135	715	22.059	22.059
ruditapes_lrc38134	27.655	27.655	-27.655	-2.298	-1.97E-05	-2.283	-3.276	1.06E-03	0.024	1	eukaryotic translation elongation factor 1 beta 2	/// 0006414 // translational elongation /// 0005853 // eukaryotic translation elongation factor 1 complex /// 0003746 // translation elongation factor activity	48.954	217	30	277	48.954	48.954	21.299	217	22	268	21.299	21.299
ruditapes_lrc32454	278.926	278.926	-278.926	-2.298	-1.99E-04	-2.282	-10.402	2.42E-25	5.64E-23	7.89E-21	ribosomal protein l23	/// 0006414 // translational elongation /// 0006610 // ribosomal protein import into nucleus /// 0005515 // protein binding /// 0022625 // cytosolic large ribosomal subunit /// 0000022 // mitotic spindle elongation /// 0003735 // structural constituent of ribosome	493.826	462	241	"5,949"	493.826	493.826	214.9	462	130	"5,757"	214.9	214.9
ruditapes2_c137	10.89	10.89	-10.89	-2.288	-7.75E-06	-2.273	-2.05	0.04	0.443	1	mannose c type 1		19.345	"1,130"	570	570	19.345	19.345	8.455	"1,130"	554	554	8.455	8.455
ruditapes_c3869	172.993	172.993	-172.993	-2.279	-1.23E-04	-2.264	-8.155	3.50E-16	4.51E-14	1.14E-11	ribosomal protein l3	/// 0000022 // mitotic spindle elongation /// 0022626 // cytosolic ribosome /// 0006412 // translation /// 0003735 // structural constituent of ribosome	308.231	645	"1,209"	"5,184"	308.231	308.231	135.239	645	"1,086"	"5,058"	135.239	135.239
ruditapes_c7698	9.303	9.303	-9.303	-2.274	-6.62E-06	-2.259	-1.889	0.059	0.578	1	f5 8 type c domain protein		16.605	940	407	407	16.605	16.605	7.302	940	398	398	7.302	7.302
ruditapes2_c3511	7.678	7.678	-7.678	-2.271	-5.46E-06	-2.255	-1.714	0.086	0.74	1	s-crystallin sl11 (major lens polypeptide)		13.719	"1,079"	234	386	13.719	13.719	6.042	"1,079"	226	378	6.042	6.042
ruditapes_lrc35949	195.82	195.82	-195.82	-2.269	-1.39E-04	-2.254	-8.655	4.94E-18	7.26E-16	1.61E-13	60s ribosomal protein l6	/// 0030529 // ribonucleoprotein complex	350.136	385	278	"3,515"	350.136	350.136	154.316	385	324	"3,445"	154.316	154.316
ruditapes_c16615	36.979	36.979	-36.979	-2.266	-2.63E-05	-2.251	-3.758	1.71E-04	4.99E-03	1	endonuclease reverse transcriptase		66.186	682	"1,121"	"1,177"	66.186	66.186	29.207	682	"1,079"	"1,155"	29.207	29.207
ruditapes_c28591	41.35	41.35	-41.35	-2.266	-2.94E-05	-2.251	-3.974	7.08E-05	2.26E-03	1	glucosidase 2 subunit beta		74.013	585	657	"1,129"	74.013	74.013	32.664	585	631	"1,108"	32.664	32.664
ruditapes_lrc33733	82.484	82.484	-82.484	-2.265	-5.87E-05	-2.25	-5.612	2.00E-08	1.22E-06	6.53E-04	40s ribosomal protein s20	/// 0015935 // small ribosomal subunit /// 0006412 // translation /// 0003723 // RNA binding /// 0003735 // structural constituent of ribosome	147.665	508	318	"1,956"	147.665	147.665	65.181	508	200	"1,920"	65.181	65.181
ruditapes_lrc33994	270.674	270.674	-270.674	-2.264	-1.93E-04	-2.249	-10.164	2.87E-24	6.19E-22	9.34E-20	small subunit ribosomal protein 25	/// 0005840 // ribosome	484.751	450	"1,002"	"5,688"	484.751	484.751	214.077	450	489	"5,586"	214.077	214.077
ruditapes2_c1677	30.862	30.862	-30.862	-2.263	-2.20E-05	-2.248	-3.431	6.02E-04	0.015	1	radial spokehead-like 3		55.287	"1,028"	"1,482"	"1,482"	55.287	55.287	24.426	"1,028"	"1,456"	"1,456"	24.426	24.426
ruditapes_lrc36525	15.384	15.384	-15.384	-2.26	-1.09E-05	-2.245	-2.42	0.016	0.216	1	guanine nucleotide binding protein beta polypeptide 2-like 1	/// 0019903 // protein phosphatase binding /// 0043025 // cell soma /// 0005737 // cytoplasm /// 0005102 // receptor binding /// 0007165 // signal transduction	27.592	606	73	436	27.592	27.592	12.209	606	42	429	12.209	12.209
ruditapes2_c3707	25.715	25.715	-25.715	-2.258	-1.83E-05	-2.243	-3.127	1.76E-03	0.037	1	glutathione peroxidase 3	/// 0005615 // extracellular space /// 0042744 // hydrogen peroxide catabolic process /// 0008430 // selenium binding /// 0008134 // transcription factor binding /// 0006982 // response to lipid hydroperoxide /// 0004602 // glutathione peroxidase activity /// 0051289 // protein homotetramerization	46.16	717	367	863	46.16	46.16	20.445	717	291	850	20.445	20.445
ruditapes2_c1190	124.138	124.138	-124.138	-2.255	-8.83E-05	-2.24	-6.867	6.55E-12	5.81E-10	2.14E-07	elongation factor 1-beta		223.044	804	"1,487"	"4,676"	223.044	223.044	98.906	804	"1,118"	"4,611"	98.906	98.906
ruditapes_lrc15185	50.239	50.239	-50.239	-2.253	-3.57E-05	-2.237	-4.366	1.27E-05	4.77E-04	0.413	ribosomal protein l17	/// 0006414 // translational elongation /// 0015934 // large ribosomal subunit /// 0005829 // cytosol /// 0003735 // structural constituent of ribosome	90.35	798	226	"1,880"	90.35	90.35	40.11	798	148	"1,856"	40.11	40.11
ruditapes_lrc33839	39.926	39.926	-39.926	-2.241	-2.84E-05	-2.226	-3.881	1.04E-04	3.18E-03	1	h3 histone family 3a	/// 0001740 // Barr body /// 0006334 // nucleosome assembly /// 0003677 // DNA binding /// 0000786 // nucleosome	72.085	673	35	"1,265"	72.085	72.085	32.16	673	49	"1,255"	32.16	32.16
ruditapes_lrc7516	172.802	172.802	-172.802	-2.233	-1.23E-04	-2.218	-8.058	7.77E-16	9.67E-14	2.53E-11	laminin receptor 1	/// 0005624 // membrane fraction /// 0043236 // laminin binding /// 0015935 // small ribosomal subunit /// 0006412 // translation /// 0003735 // structural constituent of ribosome /// 0004872 // receptor activity	312.911	829	838	"6,764"	312.911	312.911	140.109	829	737	"6,735"	140.109	140.109
ruditapes_lrc32549	24.396	24.396	-24.396	-2.231	-1.74E-05	-2.216	-3.026	2.48E-03	0.049	1	ribosomal protein l26e		44.211	517	2	596	44.211	44.211	19.814	517	3	594	19.814	19.814
ruditapes2_lrc4096	15.178	15.178	-15.178	-2.228	-1.08E-05	-2.213	-2.384	0.017	0.233	1	mgc89694 protein	/// 0006633 // fatty acid biosynthetic process /// 0000036 // acyl carrier activity /// 0031177 // phosphopantetheine binding /// 0048037 // cofactor binding	27.54	784	71	563	27.54	27.54	12.362	784	85	562	12.362	12.362
ruditapes2_c3306	72.889	72.889	-72.889	-2.226	-5.19E-05	-2.211	-5.223	1.76E-07	9.13E-06	5.74E-03	calponin-like protein		132.341	854	508	"2,947"	132.341	132.341	59.451	854	445	"2,944"	59.451	59.451
ruditapes_s38725	11.977	11.977	-11.977	-2.224	-8.52E-06	-2.209	-2.116	0.034	0.397	1	40s ribosomal protein s20	/// 0015935 // small ribosomal subunit /// 0006412 // translation /// 0003723 // RNA binding /// 0003735 // structural constituent of ribosome	21.764	474	56	269	21.764	21.764	9.787	474	40	269	9.787	9.787
ruditapes2_lrc4902	29.026	29.026	-29.026	-2.224	-2.07E-05	-2.209	-3.294	9.88E-04	0.023	1	ribosomal protein l11	/// 0006414 // translational elongation /// 0006605 // protein targeting /// 0005730 // nucleolus /// 0005515 // protein binding /// 0022625 // cytosolic large ribosomal subunit /// 0019843 // rRNA binding /// 0006364 // rRNA processing /// 0003735 // structural constituent of ribosome /// 0009790 // embryonic development /// 0042273 // ribosomal large subunit biogenesis	52.745	738	83	"1,015"	52.745	52.745	23.719	738	44	"1,015"	23.719	23.719
ruditapes_lrc33726	14.757	14.757	-14.757	-2.218	-1.05E-05	-2.203	-2.345	0.019	0.253	1	ribosomal protein s13	/// 0006414 // translational elongation /// 0005730 // nucleolus /// 0005515 // protein binding /// 0003729 // mRNA binding /// 0003735 // structural constituent of ribosome /// 0022627 // cytosolic small ribosomal subunit /// 0033119 // negative regulation of RNA splicing	26.874	538	0	377	26.874	26.874	12.117	538	0	378	12.117	12.117
ruditapes2_c1059	11.382	11.382	-11.382	-2.214	-8.10E-06	-2.199	-2.057	0.04	0.438	1	prolyl-trna synthetase associated protein		20.761	798	127	432	20.761	20.761	9.379	798	147	434	9.379	9.379
ruditapes_c14324	8.506	8.506	-8.506	-2.212	-6.05E-06	-2.197	-1.778	0.075	0.679	1	purple acid		15.525	457	152	185	15.525	15.525	7.019	457	151	186	7.019	7.019
ruditapes2_c2237	12.572	12.572	-12.572	-2.208	-8.94E-06	-2.193	-2.159	0.031	0.366	1	docking protein 3		22.978	943	565	565	22.978	22.978	10.406	943	569	569	10.406	10.406
ruditapes2_lrc4859	22.342	22.342	-22.342	-2.207	-1.59E-05	-2.192	-2.877	4.01E-03	0.073	1	isoform b		40.849	875	26	932	40.849	40.849	18.507	875	31	939	18.507	18.507
ruditapes2_lrc5088	291.312	291.312	-291.312	-2.201	-2.07E-04	-2.186	-10.375	3.22E-25	7.46E-23	1.05E-20	ribosomal protein l13	/// 0006414 // translational elongation /// 0051726 // regulation of cell cycle /// 0005515 // protein binding /// 0022625 // cytosolic large ribosomal subunit	533.868	820	"1,663"	"11,415"	533.868	533.868	242.555	820	556	"11,533"	242.555	242.555
ruditapes2_c121	10.09	10.09	-10.09	-2.197	-7.18E-06	-2.182	-1.929	0.054	0.542	1	tropomyosin		18.518	"2,218"	89	"1,071"	18.518	18.518	8.428	"2,218"	107	"1,084"	8.428	8.428
ruditapes_c4265	49.456	49.456	-49.456	-2.185	-3.52E-05	-2.17	-4.256	2.09E-05	7.47E-04	0.68	heat shock protein 90	/// 0005524 // ATP binding /// 0006950 // response to stress /// 0030235 // nitric-oxide synthase regulator activity /// 0045429 // positive regulation of nitric oxide biosynthetic process /// 0005737 // cytoplasm /// 0030911 // TPR domain binding /// 0051082 // unfolded protein binding /// 0006457 // protein folding	91.204	751	424	"1,786"	91.204	91.204	41.748	751	613	"1,818"	41.748	41.748
ruditapes_s39352	22.021	22.021	-22.021	-2.183	-1.57E-05	-2.168	-2.838	4.54E-03	0.081	1	60s ribosomal protein l9	/// 0005840 // ribosome /// 0006412 // translation /// 0003735 // structural constituent of ribosome	40.639	352	0	373	40.639	40.639	18.618	352	1	380	18.618	18.618
ruditapes_c7870	9.576	9.576	-9.576	-2.177	-6.81E-06	-2.162	-1.868	0.062	0.594	1	pten induced kinase 1	/// 0005524 // ATP binding /// 0006950 // response to stress /// 0005739 // mitochondrion /// 0006468 // protein amino acid phosphorylation /// 0004674 // protein serine/threonine kinase activity /// 0000287 // magnesium ion binding /// 0007243 // protein kinase cascade	17.714	"1,102"	483	509	17.714	17.714	8.138	"1,102"	509	520	8.138	8.138
ruditapes_lrc33393	62.544	62.544	-62.544	-2.164	-4.45E-05	-2.149	-4.758	1.96E-06	8.69E-05	0.064	ribosomal protein l38	/// 0006414 // translational elongation /// 0005515 // protein binding /// 0022625 // cytosolic large ribosomal subunit /// 0003723 // RNA binding /// 0003735 // structural constituent of ribosome /// 0009790 // embryonic development	116.297	308	77	934	116.297	116.297	53.753	308	53	960	53.753	53.753
ruditapes2_lrc3596	212.128	212.128	-212.128	-2.156	-1.51E-04	-2.141	-8.745	2.23E-18	3.32E-16	7.28E-14	tubulin alpha-3	/// 0005198 // structural molecule activity /// 0051258 // protein polymerization /// 0005525 // GTP binding /// 0003924 // GTPase activity /// 0043234 // protein complex /// 0005874 // microtubule /// 0007018 // microtubule-based movement	395.635	860	"3,705"	"8,872"	395.635	395.635	183.507	860	"3,063"	"9,151"	183.507	183.507
ruditapes2_lrc5258	8.092	8.092	-8.092	-2.154	-5.75E-06	-2.139	-1.707	0.088	0.747	1	ribosomal protein l8	/// 0006414 // translational elongation /// 0022625 // cytosolic large ribosomal subunit /// 0019843 // rRNA binding /// 0003735 // structural constituent of ribosome	15.105	391	0	154	15.105	15.105	7.013	391	0	159	7.013	7.013
ruditapes2_lrc4212	87.498	87.498	-87.498	-2.151	-6.22E-05	-2.137	-5.608	2.04E-08	1.24E-06	6.66E-04	40s ribosomal protein s17	/// 0005622 // intracellular	163.505	577	159	"2,460"	163.505	163.505	76.007	577	148	"2,543"	76.007	76.007
ruditapes2_c184	8.319	8.319	-8.319	-2.15	-5.92E-06	-2.135	-1.729	0.084	0.726	1	xylose isomerase	/// 0046872 // metal ion binding /// 0006098 // pentose-phosphate shunt /// 0042732 // D-xylose metabolic process /// 0009045 // xylose isomerase activity	15.554	"1,075"	409	436	15.554	15.554	7.235	"1,075"	418	451	7.235	7.235
ruditapes2_c315	11.083	11.083	-11.083	-2.145	-7.88E-06	-2.13	-1.992	0.046	0.488	1	prefoldin subunit 2	/// 0016272 // prefoldin complex /// 0051082 // unfolded protein binding /// 0006457 // protein folding	20.765	953	401	516	20.765	20.765	9.682	953	436	535	9.682	9.682
ruditapes_lrc33374	16.501	16.501	-16.501	-2.141	-1.17E-05	-2.127	-2.428	0.015	0.213	1	ribosomal protein s6	/// 0005811 // lipid particle /// 0000022 // mitotic spindle elongation /// 0006412 // translation /// 0003735 // structural constituent of ribosome /// 0022627 // cytosolic small ribosomal subunit /// 0006955 // immune response	30.962	545	8	440	30.962	30.962	14.461	545	13	457	14.461	14.461
ruditapes2_c1164	13.266	13.266	-13.266	-2.132	-9.43E-06	-2.118	-2.172	0.03	0.358	1	novel protein		24.985	571	361	372	24.985	24.985	11.719	571	368	388	11.719	11.719
ruditapes_c401	7.989	7.989	-7.989	-2.125	-5.68E-06	-2.11	-1.682	0.093	0.772	1	type alpha 1	/// 0005198 // structural molecule activity /// 0005578 // proteinaceous extracellular matrix	15.091	709	47	279	15.091	15.091	7.103	709	60	292	7.103	7.103
ruditapes2_c4603	147.554	147.554	-147.554	-2.124	-1.05E-04	-2.11	-7.227	4.92E-13	4.91E-11	1.61E-08	ribosomal protein l6	/// 0005840 // ribosome /// 0006412 // translation /// 0003735 // structural constituent of ribosome	278.805	678	440	"4,929"	278.805	278.805	131.251	678	483	"5,160"	131.251	131.251
ruditapes_c2464	8.445	8.445	-8.445	-2.116	-6.00E-06	-2.102	-1.725	0.085	0.73	1	ferritin	/// 0055114 // oxidation reduction /// 0004322 // ferroxidase activity /// 0006826 // iron ion transport /// 0006879 // cellular iron ion homeostasis /// 0005737 // cytoplasm /// 0008199 // ferric iron binding	16.011	800	85	334	16.011	16.011	7.567	800	73	351	7.567	7.567
ruditapes_lrc38640	22.392	22.392	-22.392	-2.114	-1.59E-05	-2.1	-2.807	5.00E-03	0.088	1	ependymin related protein-1 precursor		42.492	713	79	790	42.492	42.492	20.1	713	56	831	20.1	20.1
ruditapes2_c5480	83.351	83.351	-83.351	-2.114	-5.93E-05	-2.1	-5.416	6.11E-08	3.42E-06	1.99E-03	ribosomal protein l26	/// 0006414 // translational elongation /// 0005515 // protein binding /// 0022625 // cytosolic large ribosomal subunit /// 0006364 // rRNA processing /// 0003723 // RNA binding /// 0003735 // structural constituent of ribosome /// 0042273 // ribosomal large subunit biogenesis	158.176	490	283	"2,021"	158.176	158.176	74.825	490	273	"2,126"	74.825	74.825
ruditapes2_lrc4797	467.118	467.118	-467.118	-2.113	-3.32E-04	-2.099	-12.821	1.26E-37	4.33E-35	4.11E-33	ribosomal protein s7	/// 0006414 // translational elongation /// 0005730 // nucleolus /// 0005515 // protein binding /// 0042274 // ribosomal small subunit biogenesis /// 0006364 // rRNA processing /// 0003723 // RNA binding /// 0003735 // structural constituent of ribosome /// 0022627 // cytosolic small ribosomal subunit	886.719	626	784	"14,474"	886.719	886.719	419.601	626	542	"15,231"	419.601	419.601
ruditapes_c2021	14.625	14.625	-14.625	-2.112	-1.04E-05	-2.098	-2.267	0.023	0.296	1	mgc84531 protein		27.772	"1,258"	703	911	27.772	27.772	13.147	"1,258"	660	959	13.147	13.147
ruditapes_lrc32328	135.005	135.005	-135.005	-2.105	-9.60E-05	-2.091	-6.874	6.23E-12	5.54E-10	2.03E-07	ribosomal protein l6	/// 0005840 // ribosome /// 0006412 // translation /// 0003735 // structural constituent of ribosome	257.181	711	290	"4,768"	257.181	257.181	122.176	711	324	"5,037"	122.176	122.176
ruditapes_c422	228.687	228.687	-228.687	-2.104	-1.63E-04	-2.089	-8.944	3.77E-19	5.92E-17	1.23E-14	ribosomal protein l35	/// 0006414 // translational elongation /// 0005730 // nucleolus /// 0005515 // protein binding /// 0003729 // mRNA binding /// 0022625 // cytosolic large ribosomal subunit /// 0003735 // structural constituent of ribosome	435.901	456	827	"5,183"	435.901	435.901	207.214	456	"1,126"	"5,479"	207.214	207.214
ruditapes2_c517	9.2	9.2	-9.2	-2.1	-6.54E-06	-2.086	-1.792	0.073	0.666	1	complement component		17.561	594	201	272	17.561	17.561	8.362	594	213	288	8.362	8.362
ruditapes_c11801	8.644	8.644	-8.644	-2.097	-6.15E-06	-2.083	-1.735	0.083	0.72	1	dna polymerase iii alpha subunit		16.524	499	140	215	16.524	16.524	7.88	499	153	228	7.88	7.88
ruditapes2_c3200	15.444	15.444	-15.444	-2.093	-1.10E-05	-2.079	-2.317	0.021	0.268	1	prolyl-trna synthetase associated region		29.569	"1,249"	455	963	29.569	29.569	14.125	"1,249"	447	"1,023"	14.125	14.125
ruditapes_lrc8151	50.117	50.117	-50.117	-2.089	-3.56E-05	-2.075	-4.168	3.07E-05	1.06E-03	1	guanine nucleotide binding protein (g protein) beta polypeptide 2-like 1	/// 0019903 // protein phosphatase binding /// 0043025 // cell soma /// 0005737 // cytoplasm	96.124	930	272	"2,331"	96.124	96.124	46.007	930	240	"2,481"	46.007	46.007
ruditapes2_lrc6026	17.633	17.633	-17.633	-2.088	-1.25E-05	-2.074	-2.472	0.013	0.194	1	ependymin related protein 1 precursor		33.839	663	34	585	33.839	33.839	16.205	663	28	623	16.205	16.205
ruditapes_lrc35676	73.365	73.365	-73.365	-2.079	-5.22E-05	-2.065	-5.027	4.97E-07	2.40E-05	0.016	beta 2c	/// 0005198 // structural molecule activity /// 0051258 // protein polymerization /// 0005525 // GTP binding /// 0003924 // GTPase activity /// 0043234 // protein complex /// 0042267 // natural killer cell mediated cytotoxicity /// 0005874 // microtubule /// 0006928 // cell motion /// 0051082 // unfolded protein binding /// 0042288 // MHC class I protein binding /// 0007018 // microtubule-based movement	141.367	615	"1,533"	"2,267"	141.367	141.367	68.002	615	"1,336"	"2,425"	68.002	68.002
ruditapes_c3475	37.526	37.526	-37.526	-2.079	-2.67E-05	-2.065	-3.596	3.23E-04	8.66E-03	1	heterogeneous nuclear ribonucleoprotein d-like	/// 0003676 // nucleic acid binding /// 0010467 // gene expression /// 0016070 // RNA metabolic process /// 0044424 // intracellular part	72.3	488	664	920	72.3	72.3	34.774	488	739	984	34.774	34.774
ruditapes_lrc33883	41.523	41.523	-41.523	-2.062	-2.95E-05	-2.048	-3.763	1.68E-04	4.90E-03	1	40s ribosomal protein s27	/// 0006414 // translational elongation /// 0008283 // cell proliferation /// 0005634 // nucleus /// 0005515 // protein binding /// 0003677 // DNA binding /// 0008270 // zinc ion binding /// 0003735 // structural constituent of ribosome /// 0022627 // cytosolic small ribosomal subunit	80.612	559	201	"1,175"	80.612	80.612	39.088	559	192	"1,267"	39.088	39.088
ruditapes_lrc33658	13.772	13.772	-13.772	-2.059	-9.79E-06	-2.045	-2.165	0.03	0.363	1	serine protease inhibitor 2		26.78	411	96	287	26.78	26.78	13.008	411	75	310	13.008	13.008
ruditapes2_c4177	12.985	12.985	-12.985	-2.058	-9.23E-06	-2.044	-2.101	0.036	0.407	1	tubulin polymerization-promoting protein family member 3	/// 0002119 // nematode larval development /// 0000003 // reproduction	25.256	"1,151"	97	758	25.256	25.256	12.271	"1,151"	141	819	12.271	12.271
ruditapes2_lrc4789	43.684	43.684	-43.684	-2.054	-3.11E-05	-2.04	-3.849	1.19E-04	3.60E-03	1	apolipophorin precursor protein		85.136	882	332	"1,958"	85.136	85.136	41.452	882	452	"2,120"	41.452	41.452
ruditapes2_c259	345.166	345.166	-345.166	-2.046	-2.45E-04	-2.033	-10.796	3.60E-27	9.09E-25	1.17E-22	ribosomal protein s18	/// 0007275 // multicellular organismal development /// 0006414 // translational elongation /// 0051726 // regulation of cell cycle /// 0019843 // rRNA binding /// 0003735 // structural constituent of ribosome /// 0022627 // cytosolic small ribosomal subunit /// 0006417 // regulation of translation	675.003	684	734	"12,039"	675.003	675.003	329.838	684	229	"13,082"	329.838	329.838
ruditapes2_lrc3482	18.979	18.979	-18.979	-2.042	-1.35E-05	-2.028	-2.527	0.012	0.172	1	atp synthase subunit b		37.201	"1,201"	228	"1,165"	37.201	37.201	18.222	"1,201"	231	"1,269"	18.222	18.222
ruditapes2_c427	51.081	51.081	-51.081	-2.042	-3.63E-05	-2.028	-4.146	3.38E-05	1.15E-03	1	psmd1 protein	/// 0031145 // anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process /// 0051436 // negative regulation of ubiquitin-protein ligase activity during mitotic cell cycle /// 0051437 // positive regulation of ubiquitin-protein ligase activity during mitotic cell cycle /// 0005515 // protein binding /// 0005838 // proteasome regulatory particle	100.109	"1,273"	"3,323"	"3,323"	100.109	100.109	49.028	"1,273"	"3,619"	"3,619"	49.028	49.028
ruditapes_c10251	19.8	19.8	-19.8	-2.041	-1.41E-05	-2.027	-2.581	9.86E-03	0.153	1	mgc79762 protein		38.818	574	562	581	38.818	38.818	19.018	574	601	633	19.018	19.018
ruditapes2_c258	34.973	34.973	-34.973	-2.038	-2.49E-05	-2.025	-3.427	6.10E-04	0.015	1	heat shock protein 90	/// 0005524 // ATP binding /// 0006950 // response to stress /// 0030235 // nitric-oxide synthase regulator activity /// 0045429 // positive regulation of nitric oxide biosynthetic process /// 0030911 // TPR domain binding /// 0051082 // unfolded protein binding /// 0006457 // protein folding	68.651	848	704	"1,518"	68.651	68.651	33.678	848	858	"1,656"	33.678	33.678
ruditapes2_c373	50.255	50.255	-50.255	-2.034	-3.57E-05	-2.02	-4.102	4.10E-05	1.37E-03	1	cytochrome somatic	"/// 0042743 // hydrogen peroxide metabolic process /// 0005759 // mitochondrial matrix /// 0006810 // transport /// 0006309 // DNA fragmentation involved in apoptosis /// 0005634 // nucleus /// 0043065 // positive regulation of apoptosis /// 0006123 // mitochondrial electron transport,  cytochrome c to oxygen /// 0020037 // heme binding /// 0005746 // mitochondrial respiratory chain /// 0005625 // soluble fraction /// 0006979 // response to oxidative stress /// 0005829 // cytosol /// 0008635 // activation of caspase activity by cytochrome c /// 0045155 // electron transporter,  transferring electrons from CoQH2-cytochrome c reductase complex and cytochrome c oxidase complex activity /// 0008289 // lipid binding"	98.879	792	329	"2,042"	98.879	98.879	48.623	792	383	"2,233"	48.623	48.623
ruditapes_s37429	17.904	17.904	-17.904	-2.028	-1.27E-05	-2.014	-2.443	0.015	0.206	1	alpha 3 type vi collagen isoform 1 precursor		35.325	393	80	362	35.325	35.325	17.421	393	154	397	17.421	17.421
ruditapes_lrc32788	331.075	331.075	-331.075	-2.024	-2.35E-04	-2.01	-10.496	8.99E-26	2.12E-23	2.93E-21	ribosomal protein l26	/// 0006414 // translational elongation /// 0005515 // protein binding /// 0022625 // cytosolic large ribosomal subunit /// 0006364 // rRNA processing /// 0003723 // RNA binding /// 0003735 // structural constituent of ribosome /// 0042273 // ribosomal large subunit biogenesis	654.384	522	"1,158"	"8,907"	654.384	654.384	323.308	522	"1,525"	"9,786"	323.308	323.308
ruditapes_lrc32136	8.946	8.946	-8.946	-2.023	-6.36E-06	-2.009	-1.725	0.085	0.73	1	AF339450_1hillarin [Hirudo medicinalis]		17.689	"1,071"	72	494	17.689	17.689	8.744	"1,071"	37	543	8.744	8.744
ruditapes2_c857	47.967	47.967	-47.967	-2.023	-3.41E-05	-2.01	-3.994	6.50E-05	2.09E-03	1	thioredoxin	/// 0009987 // cellular process	94.837	"1,421"	"1,191"	"3,514"	94.837	94.837	46.871	"1,421"	"1,448"	"3,862"	46.871	46.871
ruditapes_lrc35548	26.403	26.403	-26.403	-2.02	-1.88E-05	-2.007	-2.96	3.08E-03	0.059	1	elongation factor 1 delta	/// 0006412 // translation	52.283	779	101	"1,062"	52.283	52.283	25.88	779	125	"1,169"	25.88	25.88
ruditapes2_lrc4161	35.753	35.753	-35.753	-2.02	-2.54E-05	-2.006	-3.444	5.73E-04	0.014	1	tyb_aplca ame: full=thymosin beta ame: full=beta-thymosin		70.81	944	10	"1,743"	70.81	70.81	35.058	944	5	"1,919"	35.058	35.058
ruditapes_c2257	75.686	75.686	-75.686	-2.019	-5.38E-05	-2.005	-5.009	5.46E-07	2.63E-05	0.018	cytochrome c oxidase subunit ii	/// 0006810 // transport /// 0005507 // copper ion binding /// 0004129 // cytochrome-c oxidase activity /// 0020037 // heme binding /// 0016021 // integral to membrane /// 0005743 // mitochondrial inner membrane /// 0009055 // electron carrier activity /// 0022904 // respiratory electron transport chain	149.97	514	"1,274"	"2,010"	149.97	149.97	74.284	514	"1,695"	"2,214"	74.284	74.284
ruditapes2_lrc4394	266.24	266.24	-266.24	-2.012	-1.89E-04	-1.999	-9.376	6.87E-21	1.24E-18	2.24E-16	ribosomal protein l13a	/// 0015934 // large ribosomal subunit /// 0006412 // translation /// 0003735 // structural constituent of ribosome	529.238	660	"3,060"	"9,108"	529.238	529.238	262.998	660	"1,675"	"10,065"	262.998	262.998
ruditapes2_c1342	8.761	8.761	-8.761	-2.007	-6.22E-06	-1.993	-1.697	0.09	0.757	1	"PREDICTED: similar to predicted protein,  partial [Hydra magnipapillata]"		17.465	426	46	194	17.465	17.465	8.704	426	61	215	8.704	8.704
ruditapes2_lrc3145	275.716	275.716	-275.716	-2.004	-1.96E-04	-1.991	-9.515	1.81E-21	3.36E-19	5.91E-17	alpha 8 like 4		550.254	977	"6,453"	"14,018"	550.254	550.254	274.538	977	"5,405"	"15,553"	274.538	274.538
ruditapes_c486	25.027	25.027	-25.027	-2.002	-1.78E-05	-1.988	-2.864	4.18E-03	0.075	1	eukaryotic translation initiation factor 5a	/// 0006413 // translational initiation /// 0003743 // translation initiation factor activity	50.006	"1,405"	209	"1,832"	50.006	50.006	24.979	"1,405"	202	"2,035"	24.979	24.979
ruditapes2_c3301	10.577	10.577	-10.577	-2.002	-7.51E-06	-1.989	-1.862	0.063	0.6	1	translocon-associated protein subunit gamma	/// 0005789 // endoplasmic reticulum membrane /// 0005488 // binding /// 0016021 // integral to membrane	21.127	"1,051"	240	579	21.127	21.127	10.551	"1,051"	227	643	10.551	10.551
ruditapes2_lrc3447	112.821	112.821	-112.821	-1.991	-8.02E-05	-1.977	-6.058	1.38E-09	1.00E-07	4.50E-05	ribosomal protein l7	/// 0015934 // large ribosomal subunit /// 0030528 // transcription regulator activity /// 0006412 // translation /// 0003735 // structural constituent of ribosome	226.721	"1,100"	316	"6,503"	226.721	226.721	113.9	"1,100"	358	"7,265"	113.9	113.9
ruditapes_lrc32869	35.244	35.244	-35.244	-1.987	-2.50E-05	-1.974	-3.381	7.21E-04	0.017	1	ribosomal protein l18a	/// 0006414 // translational elongation /// 0005515 // protein binding /// 0022625 // cytosolic large ribosomal subunit /// 0003723 // RNA binding /// 0003735 // structural constituent of ribosome	70.955	594	38	"1,099"	70.955	70.955	35.711	594	10	"1,230"	35.711	35.711
ruditapes_lrc32531	11.983	11.983	-11.983	-1.985	-8.51E-06	-1.972	-1.97	0.049	0.504	1	cytochrome c oxidase subunit via polypeptide 1	/// 0016491 // oxidoreductase activity /// 0005743 // mitochondrial inner membrane /// 0008152 // metabolic process	24.147	621	47	391	24.147	24.147	12.164	621	34	438	12.164	12.164
ruditapes_lrc39587	8.775	8.775	-8.775	-1.984	-6.23E-06	-1.97	-1.685	0.092	0.769	1	set translocation (myeloid leukemia-associated) b	/// 0048471 // perinuclear region of cytoplasm /// 0004864 // phosphoprotein phosphatase inhibitor activity /// 0006337 // nucleosome disassembly /// 0005634 // nucleus /// 0006334 // nucleosome assembly /// 0035067 // negative regulation of histone acetylation /// 0005783 // endoplasmic reticulum /// 0008601 // protein phosphatase type 2A regulator activity /// 0006260 // DNA replication /// 0006913 // nucleocytoplasmic transport /// 0042393 // histone binding	17.694	466	110	215	17.694	17.694	8.919	466	115	241	8.919	8.919
ruditapes_lrc34496	125.577	125.577	-125.577	-1.978	-8.92E-05	-1.965	-6.364	1.97E-10	1.54E-08	6.41E-06	ribosomal protein s11	/// 0005840 // ribosome /// 0019843 // rRNA binding /// 0006412 // translation /// 0003735 // structural constituent of ribosome	253.925	520	112	"3,443"	253.925	253.925	128.348	520	64	"3,870"	128.348	128.348
ruditapes_c3931	59.294	59.294	-59.294	-1.971	-4.21E-05	-1.958	-4.362	1.29E-05	4.84E-04	0.421	heat shock protein 90	/// 0005524 // ATP binding /// 0006950 // response to stress /// 0030235 // nitric-oxide synthase regulator activity /// 0045429 // positive regulation of nitric oxide biosynthetic process /// 0005737 // cytoplasm /// 0030911 // TPR domain binding /// 0051082 // unfolded protein binding /// 0006457 // protein folding	120.35	731	361	"2,294"	120.35	120.35	61.056	731	617	"2,588"	61.056	61.056
ruditapes2_lrc4739	10.109	10.109	-10.109	-1.971	-7.18E-06	-1.958	-1.801	0.072	0.656	1	ribosomal protein s7	/// 0006414 // translational elongation /// 0051726 // regulation of cell cycle /// 0005730 // nucleolus /// 0005515 // protein binding /// 0042274 // ribosomal small subunit biogenesis /// 0006364 // rRNA processing /// 0003723 // RNA binding /// 0022627 // cytosolic small ribosomal subunit	20.521	641	0	343	20.521	20.521	10.412	641	1	387	10.412	10.412
ruditapes_s38992	38.646	38.646	-38.646	-1.97	-2.75E-05	-1.957	-3.52	4.32E-04	0.011	1	beta-actin		78.485	129	148	264	78.485	78.485	39.839	129	109	298	39.839	39.839
ruditapes_c15268	11.324	11.324	-11.324	-1.97	-8.04E-06	-1.957	-1.905	0.057	0.563	1	sperm flagellar 2		22.997	557	334	334	22.997	22.997	11.673	557	377	377	11.673	11.673
ruditapes2_lrc2615	718.112	718.112	-718.112	-1.965	-5.10E-04	-1.952	-15.154	7.16E-52	3.16E-49	2.34E-47	ribosomal protein s24	/// 0006414 // translational elongation /// 0005634 // nucleus /// 0034101 // erythrocyte homeostasis /// 0042274 // ribosomal small subunit biogenesis /// 0031369 // translation initiation factor binding /// 0006364 // rRNA processing /// 0003735 // structural constituent of ribosome /// 0022627 // cytosolic small ribosomal subunit	"1,461.97"	511	"1,237"	"19,480"	"1,461.97"	"1,461.97"	743.862	511	625	"22,041"	743.862	743.862
ruditapes2_lrc3869	268.95	268.95	-268.95	-1.964	-1.91E-04	-1.951	-9.267	1.91E-20	3.36E-18	6.22E-16	ribosomal protein l7		547.901	914	"1,183"	"13,058"	547.901	547.901	278.951	914	979	"14,784"	278.951	278.951
ruditapes_c27709	14.769	14.769	-14.769	-1.964	-1.05E-05	-1.951	-2.171	0.03	0.358	1	serine protease inhibitor 2		30.089	376	295	295	30.089	30.089	15.319	376	334	334	15.319	15.319
ruditapes2_c3823	15.898	15.898	-15.898	-1.96	-1.13E-05	-1.947	-2.249	0.024	0.307	1	malate dehydrogenase nad	/// 0030060 // L-malate dehydrogenase activity /// 0055114 // oxidation reduction /// 0006108 // malate metabolic process /// 0006099 // tricarboxylic acid cycle /// 0005488 // binding /// 0006096 // glycolysis /// 0005737 // cytoplasm	32.458	755	16	639	32.458	32.458	16.56	755	35	725	16.56	16.56
ruditapes_c3537	33.993	33.993	-33.993	-1.954	-2.41E-05	-1.941	-3.282	1.03E-03	0.024	1	protein	/// 0006810 // transport /// 0005216 // ion channel activity /// 0016020 // membrane	69.616	655	757	"1,189"	69.616	69.616	35.624	655	847	"1,353"	35.624	35.624
ruditapes_c7637	11.518	11.518	-11.518	-1.953	-8.18E-06	-1.94	-1.91	0.056	0.558	1	tektin 2	/// 0005856 // cytoskeleton /// 0016043 // cellular component organization /// 0042995 // cell projection /// 0006928 // cell motion	23.6	845	520	520	23.6	23.6	12.082	845	592	592	12.082	12.082
ruditapes2_c1073	8.792	8.792	-8.792	-1.944	-6.24E-06	-1.931	-1.663	0.096	0.788	1	h aca ribonucleoprotein complex subunit 2-like protein	/// 0042254 // ribosome biogenesis /// 0003676 // nucleic acid binding /// 0044424 // intracellular part	18.1	767	263	362	18.1	18.1	9.309	767	311	414	9.309	9.309
ruditapes_lrc32626	28.22	28.22	-28.22	-1.941	-2.00E-05	-1.928	-2.976	2.92E-03	0.056	1	prostaglandin d synthase-like		58.212	782	61	"1,187"	58.212	58.212	29.993	782	115	"1,360"	29.993	29.993
ruditapes2_lrc3199	83.518	83.518	-83.518	-1.94	-5.93E-05	-1.927	-5.118	3.09E-07	1.54E-05	0.01	ribosomal protein s13	/// 0006414 // translational elongation /// 0005730 // nucleolus /// 0005515 // protein binding /// 0003729 // mRNA binding /// 0003735 // structural constituent of ribosome /// 0022627 // cytosolic small ribosomal subunit /// 0033119 // negative regulation of RNA splicing	172.402	981	166	"4,410"	172.402	172.402	88.883	981	200	"5,056"	88.883	88.883
ruditapes2_lrc5444	95.432	95.432	-95.432	-1.939	-6.78E-05	-1.926	-5.47	4.51E-08	2.57E-06	1.47E-03	ribosomal protein l7a	/// 0042788 // polysomal ribosome /// 0006414 // translational elongation /// 0042254 // ribosome biogenesis /// 0005624 // membrane fraction /// 0022625 // cytosolic large ribosomal subunit /// 0003723 // RNA binding /// 0003735 // structural constituent of ribosome	197.06	990	139	"5,087"	197.06	197.06	101.628	990	315	"5,834"	101.628	101.628
ruditapes_lrc30423	43.39	43.39	-43.39	-1.935	-3.08E-05	-1.922	-3.683	2.31E-04	6.46E-03	1	receptor of activated kinase c 1	/// 0019903 // protein phosphatase binding /// 0043025 // cell soma /// 0005737 // cytoplasm	89.789	504	113	"1,180"	89.789	89.789	46.399	504	130	"1,356"	46.399	46.399
ruditapes_lrc35917	18.058	18.058	-18.058	-1.934	-1.28E-05	-1.92	-2.374	0.018	0.239	1	ribosomal protein l14	/// 0030529 // ribonucleoprotein complex	37.402	485	8	473	37.402	37.402	19.344	485	13	544	19.344	19.344
ruditapes_lrc34991	73.053	73.053	-73.053	-1.931	-5.19E-05	-1.918	-4.77	1.84E-06	8.24E-05	0.06	guanine nucleotide-binding protein subunit beta-2-like 1	/// 0019903 // protein phosphatase binding /// 0043025 // cell soma /// 0005737 // cytoplasm	151.551	435	183	"1,719"	151.551	151.551	78.498	435	235	"1,980"	78.498	78.498
ruditapes2_lrc4617	10.053	10.053	-10.053	-1.929	-7.14E-06	-1.916	-1.768	0.077	0.687	1	dynein cytoplasmic light peptide transcript variant 1	/// 0030286 // dynein complex /// 0016459 // myosin complex /// 0005634 // nucleus /// 0043186 // P granule /// 0005886 // plasma membrane /// 0005515 // protein binding /// 0005829 // cytosol /// 0005874 // microtubule /// 0003777 // microtubule motor activity /// 0007017 // microtubule-based process	20.874	553	39	301	20.874	20.874	10.821	553	39	347	10.821	10.821
ruditapes2_c5657	38.775	38.775	-38.775	-1.923	-2.75E-05	-1.91	-3.465	5.30E-04	0.013	1	eukaryotic translation elongation factor 1 delta (guanine nucleotide exchange protein)	/// 0006414 // translational elongation /// 0005515 // protein binding /// 0004871 // signal transducer activity /// 0043123 // positive regulation of I-kappaB kinase/NF-kappaB cascade /// 0005829 // cytosol /// 0005853 // eukaryotic translation elongation factor 1 complex	80.787	704	192	"1,483"	80.787	80.787	42.012	704	140	"1,715"	42.012	42.012
ruditapes_lrc33453	12.598	12.598	-12.598	-1.914	-8.95E-06	-1.902	-1.969	0.049	0.506	1	ribosomal protein l9	/// 0030529 // ribonucleoprotein complex	26.375	522	1	359	26.375	26.375	13.777	522	0	417	13.777	13.777
ruditapes2_lrc4529	26.198	26.198	-26.198	-1.908	-1.86E-05	-1.896	-2.833	4.62E-03	0.082	1	60s ribosomal protein l10a	/// 0005811 // lipid particle /// 0044238 // primary metabolic process /// 0022625 // cytosolic large ribosomal subunit /// 0010467 // gene expression /// 0000022 // mitotic spindle elongation /// 0003735 // structural constituent of ribosome /// 0034960 // cellular biopolymer metabolic process	55.035	793	95	"1,138"	55.035	55.035	28.837	793	69	"1,326"	28.837	28.837
ruditapes2_c1512	8.732	8.732	-8.732	-1.894	-6.20E-06	-1.881	-1.626	0.104	0.827	1	sarcoplasmic calcium-binding protein	/// 0005509 // calcium ion binding	18.497	989	54	477	18.497	18.497	9.765	989	99	560	9.765	9.765
ruditapes_c27781	14.585	14.585	-14.585	-1.892	-1.04E-05	-1.879	-2.1	0.036	0.408	1	2500003m10rik protein		30.935	693	517	559	30.935	30.935	16.35	693	617	657	16.35	16.35
ruditapes_c3502	188.307	188.307	-188.307	-1.89	-1.34E-04	-1.877	-7.539	4.75E-14	5.01E-12	1.55E-09	ribosomal protein l5	/// 0006414 // translational elongation /// 0005634 // nucleus /// 0005515 // protein binding /// 0022625 // cytosolic large ribosomal subunit /// 0006364 // rRNA processing /// 0003735 // structural constituent of ribosome /// 0008097 // 5S rRNA binding /// 0042273 // ribosomal large subunit biogenesis	400.003	"1,246"	963	"12,996"	400.003	400.003	211.696	"1,246"	"1,393"	"15,295"	211.696	211.696
ruditapes_lrc32628	19.21	19.21	-19.21	-1.888	-1.36E-05	-1.875	-2.406	0.016	0.222	1	cathepsin l		40.846	876	114	933	40.846	40.846	21.636	876	116	"1,099"	21.636	21.636
ruditapes2_c895	"11,310.42"	"11,310.42"	"-11,310.42"	-1.883	-8.03E-03	-1.87	-58.686	0	0	0	cytochrome c oxidase subunit ii	/// 0044464 // cell part	"24,122.63"	"1,443"	"812,549"	"907,652"	"24,122.63"	"24,122.63"	"12,812.21"	"1,443"	"971,158"	"1,072,033"	"12,812.21"	"12,812.21"
ruditapes2_c4288	109.403	109.403	-109.403	-1.882	-7.77E-05	-1.869	-5.729	1.01E-08	6.59E-07	3.30E-04	large subunit ribosomal protein 30	/// 0005840 // ribosome /// 0006412 // translation /// 0003735 // structural constituent of ribosome	233.43	438	22	"2,666"	233.43	233.43	124.028	438	28	"3,150"	124.028	124.028
ruditapes_lrc33749	205.158	205.158	-205.158	-1.878	-1.46E-04	-1.865	-7.832	4.81E-15	5.66E-13	1.57E-10	ribosomal protein l18a	/// 0006414 // translational elongation /// 0005515 // protein binding /// 0022625 // cytosolic large ribosomal subunit /// 0003723 // RNA binding /// 0003735 // structural constituent of ribosome	438.875	489	258	"5,596"	438.875	438.875	233.717	489	379	"6,627"	233.717	233.717
ruditapes2_lrc3943	9.001	9.001	-9.001	-1.877	-6.39E-06	-1.865	-1.64	0.101	0.811	1	ependymin related protein-1 precursor		19.261	669	4	336	19.261	19.261	10.26	669	7	398	10.26	10.26
ruditapes2_c1391	24.819	24.819	-24.819	-1.877	-1.76E-05	-1.865	-2.723	6.46E-03	0.109	1	ubiquinol-cytochrome c reductase core protein ii		53.104	928	"1,141"	"1,285"	53.104	53.104	28.285	928	"1,388"	"1,522"	28.285	28.285
ruditapes_c14	175.267	175.267	-175.267	-1.873	-1.24E-04	-1.86	-7.224	5.06E-13	5.01E-11	1.65E-08	ribosomal protein l15	/// 0006414 // translational elongation /// 0005840 // ribosome /// 0005829 // cytosol /// 0003723 // RNA binding /// 0003735 // structural constituent of ribosome	376.097	792	"1,278"	"7,767"	376.097	376.097	200.83	792	582	"9,223"	200.83	200.83
ruditapes2_c603	20.008	20.008	-20.008	-1.872	-1.42E-05	-1.859	-2.439	0.015	0.208	1	cathepsin b	/// 0005739 // mitochondrion /// 0006508 // proteolysis /// 0005515 // protein binding /// 0005764 // lysosome /// 0042470 // melanosome /// 0050790 // regulation of catalytic activity /// 0004197 // cysteine-type endopeptidase activity	42.966	939	269	"1,052"	42.966	42.966	22.958	939	344	"1,250"	22.958	22.958
ruditapes2_c3605	22.318	22.318	-22.318	-1.871	-1.58E-05	-1.858	-2.575	0.01	0.155	1	selenophosphate synthetase isoform 1		47.949	907	401	"1,134"	47.949	47.949	25.631	907	579	"1,348"	25.631	25.631
ruditapes_lrc36530	14.019	14.019	-14.019	-1.866	-9.95E-06	-1.853	-2.037	0.042	0.453	1	histone	/// 0005811 // lipid particle /// 0005634 // nucleus /// 0006334 // nucleosome assembly /// 0003677 // DNA binding /// 0005700 // polytene chromosome /// 0000786 // nucleosome	30.212	721	4	568	30.212	30.212	16.193	721	7	677	16.193	16.193
ruditapes_c19690	15.066	15.066	-15.066	-1.863	-1.07E-05	-1.85	-2.109	0.035	0.402	1	voltage-dependent anion channel 1	/// 0007612 // learning /// 0046930 // pore complex /// 0005515 // protein binding /// 0007270 // nerve-nerve synaptic transmission /// 0001662 // behavioral fear response /// 0042645 // mitochondrial nucleoid /// 0005743 // mitochondrial inner membrane /// 0006820 // anion transport /// 0006851 // mitochondrial calcium ion transport /// 0005741 // mitochondrial outer membrane /// 0008308 // voltage-gated anion channel activity	32.532	468	397	397	32.532	32.532	17.467	468	474	474	17.467	17.467
ruditapes_lrc38716	28.293	28.293	-28.293	-1.854	-2.01E-05	-1.841	-2.879	3.99E-03	0.073	1	60s ribosomal protein l7a	/// 0030529 // ribonucleoprotein complex	61.433	319	36	511	61.433	61.433	33.14	319	92	613	33.14	33.14
ruditapes_lrc34365	15.496	15.496	-15.496	-1.851	-1.10E-05	-1.838	-2.128	0.033	0.388	1	actin	/// 0005524 // ATP binding /// 0005856 // cytoskeleton /// 0005515 // protein binding /// 0005737 // cytoplasm	33.714	976	318	858	33.714	33.714	18.218	976	377	"1,031"	18.218	18.218
ruditapes2_c3108	335.075	335.075	-335.075	-1.846	-2.38E-04	-1.833	-9.877	5.23E-23	1.05E-20	1.70E-18	ribosomal protein x-linked	/// 0006414 // translational elongation /// 0008284 // positive regulation of cell proliferation /// 0045727 // positive regulation of translation /// 0019843 // rRNA binding /// 0005844 // polysome /// 0007420 // brain development /// 0003735 // structural constituent of ribosome /// 0022627 // cytosolic small ribosomal subunit /// 0009790 // embryonic development	731.28	849	"2,522"	"16,189"	731.28	731.28	396.205	849	"3,385"	"19,505"	396.205	396.205
ruditapes2_c759	13.568	13.568	-13.568	-1.846	-9.63E-06	-1.833	-1.987	0.047	0.491	1	tubulin polymerization-promoting protein family member 3		29.607	"1,158"	102	894	29.607	29.607	16.039	"1,158"	115	"1,077"	16.039	16.039
ruditapes_c8290	11.955	11.955	-11.955	-1.836	-8.48E-06	-1.824	-1.858	0.063	0.603	1	dopamine beta hydroxylase		26.249	637	436	436	26.249	26.249	14.295	637	528	528	14.295	14.295
ruditapes2_c2593	12.321	12.321	-12.321	-1.836	-8.74E-06	-1.824	-1.886	0.059	0.58	1	histone h2a	/// 0005634 // nucleus /// 0006334 // nucleosome assembly /// 0003677 // DNA binding /// 0000786 // nucleosome	27.06	805	114	568	27.06	27.06	14.739	805	149	688	14.739	14.739
ruditapes2_c6554	35.994	35.994	-35.994	-1.835	-2.55E-05	-1.823	-3.222	1.27E-03	0.028	1	solute carrier family 25 member 3 isoform b precursor isoform 6	/// 0006810 // transport /// 0006091 // generation of precursor metabolites and energy /// 0015320 // phosphate carrier activity /// 0005743 // mitochondrial inner membrane /// 0005887 // integral to plasma membrane	79.094	625	222	"1,289"	79.094	79.094	43.101	625	271	"1,562"	43.101	43.101
ruditapes2_c4732	349.827	349.827	-349.827	-1.821	-2.48E-04	-1.809	-9.985	1.78E-23	3.72E-21	5.80E-19	nadh dehydrogenase subunit 4l		775.937	507	"3,603"	"10,258"	775.937	775.937	426.109	507	"2,679"	"12,527"	426.109	426.109
ruditapes_lrc7057	16.428	16.428	-16.428	-1.819	-1.17E-05	-1.807	-2.161	0.031	0.365	1	calponin-like protein		36.483	"1,068"	"1,016"	"1,016"	36.483	36.483	20.055	"1,068"	"1,242"	"1,242"	20.055	20.055
ruditapes2_c773	296.305	296.305	-296.305	-1.819	-2.10E-04	-1.807	-9.18	4.31E-20	7.39E-18	1.41E-15	ribosomal protein s21	/// 0006414 // translational elongation /// 0047485 // protein N-terminus binding /// 0003735 // structural constituent of ribosome /// 0022627 // cytosolic small ribosomal subunit /// 0043022 // ribosome binding	658.166	346	"1,548"	"5,938"	658.166	658.166	361.862	346	"1,527"	"7,260"	361.862	361.862
ruditapes_lrc33670	28.349	28.349	-28.349	-1.816	-2.01E-05	-1.803	-2.835	4.58E-03	0.082	1	ribosomal protein l10a	/// 0006414 // translational elongation /// 0006396 // RNA processing /// 0005840 // ribosome /// 0005829 // cytosol /// 0003723 // RNA binding /// 0003735 // structural constituent of ribosome /// 0009653 // anatomical structure morphogenesis	63.101	595	63	979	63.101	63.101	34.752	595	54	"1,199"	34.752	34.752
ruditapes_lrc32562	10.259	10.259	-10.259	-1.813	-7.28E-06	-1.801	-1.704	0.088	0.751	1	elongation factor 1 delta	/// 0006414 // translational elongation /// 0005515 // protein binding /// 0004871 // signal transducer activity /// 0043123 // positive regulation of I-kappaB kinase/NF-kappaB cascade /// 0005829 // cytosol	22.872	778	46	464	22.872	22.872	12.613	778	42	569	12.613	12.613
ruditapes2_c1668	9.574	9.574	-9.574	-1.809	-6.79E-06	-1.797	-1.642	0.1	0.808	1	mitochondrial ribosomal protein l52		21.411	609	323	340	21.411	21.411	11.837	609	385	418	11.837	11.837
ruditapes2_lrc4119	104.529	104.529	-104.529	-1.8	-7.41E-05	-1.788	-5.406	6.46E-08	3.60E-06	2.11E-03	dynein light chain 2	"/// 0005868 // cytoplasmic dynein complex /// 0002119 // nematode larval development /// 0007290 // spermatid nucleus elongation /// 0035046 // pronuclear migration /// 0040010 // positive regulation of growth rate /// 0042623 // ATPase activity,  coupled /// 0007476 // imaginal disc-derived wing morphogenesis /// 0016459 // myosin complex /// 0051017 // actin filament bundle formation /// 0005634 // nucleus /// 0043186 // P granule /// 0008407 // bristle morphogenesis /// 0005886 // plasma membrane /// 0008039 // synaptic target recognition /// 0007291 // sperm individualization /// 0040011 // locomotion /// 0005829 // cytosol /// 0002009 // morphogenesis of an epithelium /// 0010171 // body morphogenesis /// 0005874 // microtubule /// 0040035 // hermaphrodite genitalia development /// 0008092 // cytoskeletal protein binding /// 0003777 // microtubule motor activity /// 0045505 // dynein intermediate chain binding /// 0042803 // protein homodimerization activity /// 0009792 // embryonic development ending in birth or egg hatching /// 0007018 // microtubule-based movement"	235.2	617	556	"3,784"	235.2	235.2	130.671	617	534	"4,675"	130.671	130.671
ruditapes2_c4998	375.416	375.416	-375.416	-1.796	-2.66E-04	-1.784	-10.226	1.52E-24	3.39E-22	4.95E-20	ribosomal protein l34a	/// 0005840 // ribosome /// 0006412 // translation /// 0003735 // structural constituent of ribosome	847.248	423	"2,148"	"9,345"	847.248	847.248	471.832	423	"2,980"	"11,573"	471.832	471.832
ruditapes2_lrc5345	25.866	25.866	-25.866	-1.795	-1.83E-05	-1.783	-2.683	7.29E-03	0.121	1	40s ribosomal protein s10	/// 0005840 // ribosome	58.383	716	278	"1,090"	58.383	58.383	32.516	716	271	"1,350"	32.516	32.516
ruditapes_c27686	10.499	10.499	-10.499	-1.794	-7.45E-06	-1.782	-1.708	0.088	0.746	1	tgf beta-inducible nuclear protein 1		23.725	472	258	292	23.725	23.725	13.227	472	337	362	13.227	13.227
ruditapes2_c4169	62.177	62.177	-62.177	-1.791	-4.41E-05	-1.779	-4.153	3.29E-05	1.12E-03	1	ribosomal protein l9	/// 0030529 // ribonucleoprotein complex	140.736	760	12	"2,789"	140.736	140.736	78.559	760	4	"3,462"	78.559	78.559
ruditapes2_lrc4479	10.826	10.826	-10.826	-1.791	-7.68E-06	-1.779	-1.732	0.083	0.723	1	ribosomal protein s19	/// 0005840 // ribosome /// 0006412 // translation /// 0003735 // structural constituent of ribosome	24.517	718	16	459	24.517	24.517	13.691	718	12	570	13.691	13.691
ruditapes2_lrc4623	13.402	13.402	-13.402	-1.788	-9.50E-06	-1.776	-1.925	0.054	0.545	1	nucleoside diphosphate kinase	/// 0005524 // ATP binding /// 0007424 // open tracheal system development /// 0006468 // protein amino acid phosphorylation /// 0006183 // GTP biosynthetic process /// 0006241 // CTP biosynthetic process /// 0004550 // nucleoside diphosphate kinase activity /// 0006228 // UTP biosynthetic process	30.402	772	140	612	30.402	30.402	17	772	226	761	17	17
ruditapes_c11289	11.679	11.679	-11.679	-1.786	-8.28E-06	-1.773	-1.795	0.073	0.663	1	solute carrier family 6 (neurotransmitter transporter) member 14	/// 0022804 // active transmembrane transporter activity /// 0043231 // intracellular membrane-bounded organelle /// 0022891 // substrate-specific transmembrane transporter activity /// 0044459 // plasma membrane part	26.548	"1,030"	713	713	26.548	26.548	14.868	"1,030"	888	888	14.868	14.868
ruditapes2_c681	216.235	216.235	-216.235	-1.784	-1.53E-04	-1.772	-7.718	1.18E-14	1.35E-12	3.84E-10	heterogeneous nuclear ribonucleoprotein d-like	/// 0030529 // ribonucleoprotein complex /// 0005634 // nucleus /// 0005515 // protein binding /// 0010467 // gene expression /// 0003723 // RNA binding /// 0016070 // RNA metabolic process /// 0043566 // structure-specific DNA binding	492.012	"1,002"	"3,339"	"12,855"	492.012	492.012	275.777	"1,002"	"5,064"	"16,023"	275.777	275.777
ruditapes_c4628	153.474	153.474	-153.474	-1.783	-1.09E-04	-1.771	-6.5	8.05E-11	6.54E-09	2.62E-06	alpha 3d	"/// 0005524 // ATP binding /// 0005198 // structural molecule activity /// 0051258 // protein polymerization /// 0005525 // GTP binding /// 0003924 // GTPase activity /// 0043234 // protein complex /// 0016021 // integral to membrane /// 0005874 // microtubule /// 0042626 // ATPase activity,  coupled to transmembrane movement of substances /// 0007018 // microtubule-based movement"	349.409	595	"2,884"	"5,421"	349.409	349.409	195.935	595	"3,062"	"6,760"	195.935	195.935
ruditapes_lrc33892	293.431	293.431	-293.431	-1.772	-2.08E-04	-1.76	-8.942	3.84E-19	5.96E-17	1.25E-14	ribosomal protein l11	/// 0006414 // translational elongation /// 0002119 // nematode larval development /// 0006605 // protein targeting /// 0040010 // positive regulation of growth rate /// 0005730 // nucleolus /// 0000003 // reproduction /// 0005515 // protein binding /// 0005840 // ribosome /// 0006364 // rRNA processing /// 0005829 // cytosol /// 0003735 // structural constituent of ribosome /// 0009790 // embryonic development /// 0042273 // ribosomal large subunit biogenesis	673.35	606	451	"10,640"	673.35	673.35	379.919	606	650	"13,350"	379.919	379.919
ruditapes_lrc13862	11.321	11.321	-11.321	-1.772	-8.03E-06	-1.76	-1.756	0.079	0.697	1	ribosomal protein l21	/// 0005840 // ribosome /// 0006412 // translation /// 0003735 // structural constituent of ribosome	25.979	620	0	420	25.979	25.979	14.659	620	0	527	14.659	14.659
ruditapes_lrc32401	11.61	11.61	-11.61	-1.767	-8.23E-06	-1.755	-1.774	0.076	0.683	1	atp synthase d chain	/// 0005811 // lipid particle	26.749	876	199	611	26.749	26.749	15.139	876	287	769	15.139	15.139
ruditapes2_lrc3246	275.823	275.823	-275.823	-1.761	-1.96E-04	-1.749	-8.621	6.61E-18	9.67E-16	2.16E-13	alpha-tubulin	/// 0007638 // mechanosensory behavior /// 0005874 // microtubule /// 0007017 // microtubule-based process	638.292	839	"6,939"	"13,964"	638.292	638.292	362.469	839	"6,779"	"17,634"	362.469	362.469
ruditapes_lrc17737	120.399	120.399	-120.399	-1.761	-8.54E-05	-1.749	-5.695	1.24E-08	7.84E-07	4.03E-04	ribosomal protein l39	/// 0022625 // cytosolic large ribosomal subunit /// 0000022 // mitotic spindle elongation /// 0006412 // translation /// 0003735 // structural constituent of ribosome	278.675	439	"1,196"	"3,190"	278.675	278.675	158.276	439	"1,236"	"4,029"	158.276	158.276
ruditapes2_c3278	269.985	269.985	-269.985	-1.755	-1.91E-04	-1.743	-8.506	1.80E-17	2.56E-15	5.87E-13	ribosomal protein s21	/// 0006414 // translational elongation /// 0047485 // protein N-terminus binding /// 0003735 // structural constituent of ribosome /// 0022627 // cytosolic small ribosomal subunit /// 0043022 // ribosome binding	627.433	344	"1,550"	"5,628"	627.433	627.433	357.448	344	"1,576"	"7,130"	357.448	357.448
ruditapes_c1848	10.58	10.58	-10.58	-1.751	-7.50E-06	-1.739	-1.68	0.093	0.774	1	gustatory receptor candidate 19		24.674	558	180	359	24.674	24.674	14.093	558	253	456	14.093	14.093
ruditapes2_c1414	13.671	13.671	-13.671	-1.746	-9.69E-06	-1.734	-1.905	0.057	0.563	1	glioma tumor suppressor candidate region gene 2		32.002	"1,335"	736	"1,114"	32.002	32.002	18.331	"1,335"	862	"1,419"	18.331	18.331
ruditapes_c36527	72.472	72.472	-72.472	-1.745	-5.14E-05	-1.733	-4.383	1.17E-05	4.44E-04	0.381	ribosomal protein l24	/// 0010458 // exit from mitosis /// 0006414 // translational elongation /// 0021554 // optic nerve development /// 0005515 // protein binding /// 0031575 // G1/S transition checkpoint /// 0022625 // cytosolic large ribosomal subunit /// 0031290 // retinal ganglion cell axon guidance /// 0000027 // ribosomal large subunit assembly /// 0060041 // retina development in camera-type eye /// 0003723 // RNA binding /// 0003735 // structural constituent of ribosome	169.785	515	172	"2,280"	169.785	169.785	97.313	515	180	"2,906"	97.313	97.313
ruditapes2_c3098	14.772	14.772	-14.772	-1.743	-1.05E-05	-1.731	-1.977	0.048	0.5	1	protein	/// 0044237 // cellular metabolic process	34.666	"1,426"	608	"1,289"	34.666	34.666	19.894	"1,426"	606	"1,645"	19.894	19.894
ruditapes_c10674	12.97	12.97	-12.97	-1.74	-9.19E-06	-1.728	-1.85	0.064	0.61	1	novel protein (zgc:153646)		30.494	371	295	295	30.494	30.494	17.525	371	377	377	17.525	17.525
ruditapes2_c2174	162.048	162.048	-162.048	-1.74	-1.15E-04	-1.728	-6.54	6.17E-11	5.09E-09	2.01E-06	poly a binding cytoplasmic 1 b	/// 0031370 // eukaryotic initiation factor 4G binding /// 0008266 // poly(U) RNA binding /// 0007596 // blood coagulation /// 0000166 // nucleotide binding /// 0060212 // negative regulation of nuclear-transcribed mRNA poly(A) tail shortening /// 0005844 // polysome /// 0043621 // protein self-association /// 0005737 // cytoplasm /// 0008270 // zinc ion binding /// 0008143 // poly(A) RNA binding /// 0048255 // mRNA stabilization /// 0017130 // poly(C) RNA binding /// 0006417 // regulation of translation	380.989	"1,067"	"10,600"	"10,600"	380.989	380.989	218.942	"1,067"	"13,546"	"13,546"	218.942	218.942
ruditapes2_c4994	105.755	105.755	-105.755	-1.736	-7.50E-05	-1.724	-5.271	1.36E-07	7.14E-06	4.43E-03	ribosomal protein l26	/// 0006414 // translational elongation /// 0005515 // protein binding /// 0022625 // cytosolic large ribosomal subunit /// 0006364 // rRNA processing /// 0003723 // RNA binding /// 0003735 // structural constituent of ribosome /// 0042273 // ribosomal large subunit biogenesis	249.521	553	363	"3,598"	249.521	249.521	143.767	553	466	"4,610"	143.767	143.767
ruditapes2_lrc2890	10.561	10.561	-10.561	-1.734	-7.48E-06	-1.722	-1.664	0.096	0.788	1	ribosomal protein s7	/// 0006414 // translational elongation /// 0005730 // nucleolus /// 0005515 // protein binding /// 0042274 // ribosomal small subunit biogenesis /// 0006364 // rRNA processing /// 0003723 // RNA binding /// 0003735 // structural constituent of ribosome /// 0022627 // cytosolic small ribosomal subunit	24.955	647	0	421	24.955	24.955	14.394	647	1	540	14.394	14.394
ruditapes2_c3119	97.859	97.859	-97.859	-1.733	-6.94E-05	-1.721	-5.063	4.13E-07	2.02E-05	0.013	myosin alkali light chain 1	/// 0005509 // calcium ion binding	231.405	"1,237"	"1,129"	"7,464"	231.405	231.405	133.547	"1,237"	"1,871"	"9,579"	133.547	133.547
ruditapes_c936	10.479	10.479	-10.479	-1.731	-7.43E-06	-1.719	-1.655	0.098	0.796	1	tpa_inf: variable region-containing chitin-binding protein 2		24.822	618	137	400	24.822	24.822	14.344	618	122	514	14.344	14.344
ruditapes2_lrc4983	11.866	11.866	-11.866	-1.73	-8.41E-06	-1.718	-1.76	0.078	0.693	1	ribosomal protein l35a	/// 0006414 // translational elongation /// 0005515 // protein binding /// 0005840 // ribosome /// 0006364 // rRNA processing /// 0005829 // cytosol /// 0003735 // structural constituent of ribosome /// 0000049 // tRNA binding /// 0042273 // ribosomal large subunit biogenesis	28.13	439	1	322	28.13	28.13	16.264	439	4	414	16.264	16.264
ruditapes_lrc13423	18.199	18.199	-18.199	-1.73	-1.29E-05	-1.719	-2.18	0.029	0.353	1	ribosomal protein s3	/// 0006414 // translational elongation /// 0019901 // protein kinase binding /// 0006919 // activation of caspase activity /// 0032088 // negative regulation of NF-kappaB transcription factor activity /// 0005634 // nucleus /// 0004519 // endonuclease activity /// 0006413 // translational initiation /// 0045738 // negative regulation of DNA repair /// 0003729 // mRNA binding /// 0012505 // endomembrane system /// 0006917 // induction of apoptosis /// 0003735 // structural constituent of ribosome /// 0022627 // cytosolic small ribosomal subunit /// 0032587 // ruffle membrane /// 0051059 // NF-kappaB binding /// 0003684 // damaged DNA binding /// 0030425 // dendrite /// 0003906 // DNA-(apurinic or apyrimidinic site) lyase activity /// 0009790 // embryonic development /// 0051536 // iron-sulfur cluster binding	43.121	820	57	922	43.121	43.121	24.922	820	34	"1,185"	24.922	24.922
ruditapes2_c46	821.02	821.02	-821.02	-1.725	-5.82E-04	-1.714	-14.617	2.21E-48	9.35E-46	7.20E-44	elongation factor 2	/// 0006414 // translational elongation /// 0042221 // response to chemical stimulus /// 0005525 // GTP binding /// 0003924 // GTPase activity /// 0005515 // protein binding /// 0005737 // cytoplasm /// 0003746 // translation elongation factor activity	"1,952.73"	961	"16,909"	"48,932"	"1,952.73"	"1,952.73"	"1,131.71"	961	"21,044"	"63,063"	"1,131.71"	"1,131.71"
ruditapes2_lrc3852	37.661	37.661	-37.661	-1.719	-2.67E-05	-1.707	-3.118	1.82E-03	0.038	1	guanine nucleotide binding protein (g protein) beta polypeptide 2-like 1	/// 0005080 // protein kinase C binding /// 0007205 // activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway /// 0019903 // protein phosphatase binding /// 0005886 // plasma membrane /// 0043025 // cell soma /// 0005737 // cytoplasm /// 0005102 // receptor binding	90.038	808	232	"1,897"	90.038	90.038	52.378	808	230	"2,454"	52.378	52.378
ruditapes_lrc19580	33.9	33.9	-33.9	-1.717	-2.40E-05	-1.705	-2.955	3.13E-03	0.059	1	vdg3 [Mytilus edulis]		81.197	435	860	921	81.197	81.197	47.297	435	"1,080"	"1,193"	47.297	47.297
ruditapes_lrc11074	525.444	525.444	-525.444	-1.714	-3.72E-04	-1.702	-11.62	3.26E-31	9.66E-29	1.06E-26	ribosomal protein l36	/// 0006414 // translational elongation /// 0005730 // nucleolus /// 0005515 // protein binding /// 0022625 // cytosolic large ribosomal subunit /// 0003735 // structural constituent of ribosome	"1,261.43"	436	"7,880"	"14,341"	"1,261.43"	"1,261.43"	735.99	436	"8,201"	"18,607"	735.99	735.99
ruditapes_lrc26499	41.952	41.952	-41.952	-1.711	-2.97E-05	-1.699	-3.277	1.05E-03	0.024	1	60s acidic ribosomal protein p2	/// 0006414 // translational elongation /// 0005840 // ribosome /// 0003735 // structural constituent of ribosome	100.981	447	90	"1,177"	100.981	100.981	59.029	447	32	"1,530"	59.029	59.029
ruditapes2_c3647	35.526	35.526	-35.526	-1.71	-2.52E-05	-1.698	-3.014	2.58E-03	0.051	1	ribosomal protein l13	/// 0006414 // translational elongation /// 0051726 // regulation of cell cycle /// 0005515 // protein binding /// 0022625 // cytosolic large ribosomal subunit	85.568	692	21	"1,544"	85.568	85.568	50.043	692	22	"2,008"	50.043	50.043
ruditapes2_lrc5253	119.892	119.892	-119.892	-1.705	-8.49E-05	-1.693	-5.523	3.34E-08	1.95E-06	1.09E-03	ribosomal protein l13	/// 0006414 // translational elongation /// 0005515 // protein binding /// 0022625 // cytosolic large ribosomal subunit	289.957	692	74	"5,232"	289.957	289.957	170.065	692	78	"6,824"	170.065	170.065
ruditapes_c34139	19.808	19.808	-19.808	-1.703	-1.40E-05	-1.691	-2.242	0.025	0.311	1	ribosomal protein l24	/// 0010458 // exit from mitosis /// 0006414 // translational elongation /// 0021554 // optic nerve development /// 0005515 // protein binding /// 0031575 // G1/S transition checkpoint /// 0022625 // cytosolic large ribosomal subunit /// 0031290 // retinal ganglion cell axon guidance /// 0000027 // ribosomal large subunit assembly /// 0060041 // retina development in camera-type eye /// 0003723 // RNA binding /// 0003735 // structural constituent of ribosome /// 0009790 // embryonic development	47.993	525	1	657	47.993	47.993	28.184	525	8	858	28.184	28.184
ruditapes2_c3369	26.792	26.792	-26.792	-1.699	-1.90E-05	-1.688	-2.602	9.26E-03	0.146	1	arginine kinase	/// 0016740 // transferase activity	65.103	"1,359"	"1,353"	"2,307"	65.103	65.103	38.311	"1,359"	"1,340"	"3,019"	38.311	38.311
ruditapes_lrc32644	44.658	44.658	-44.658	-1.697	-3.16E-05	-1.685	-3.355	7.93E-04	0.019	1	receptor of activated kinase c 1	/// 0019903 // protein phosphatase binding /// 0005886 // plasma membrane /// 0043025 // cell soma /// 0005737 // cytoplasm /// 0005102 // receptor binding	108.753	688	136	"1,951"	108.753	108.753	64.095	688	117	"2,557"	64.095	64.095
ruditapes2_c927	20.615	20.615	-20.615	-1.696	-1.46E-05	-1.685	-2.279	0.023	0.288	1	cathepsin l precursor	/// 0006508 // proteolysis /// 0004197 // cysteine-type endopeptidase activity	50.217	850	967	"1,113"	50.217	50.217	29.602	850	"1,221"	"1,459"	29.602	29.602
ruditapes_c469	11.932	11.932	-11.932	-1.687	-8.45E-06	-1.675	-1.725	0.085	0.73	1	dolichyl-diphosphooligosaccharide-protein glycosyltransferase	/// 0018279 // protein amino acid N-linked glycosylation via asparagine /// 0006496 // protein amino acid terminal N-glycosylation /// 0005515 // protein binding /// 0034097 // response to cytokine stimulus /// 0016021 // integral to membrane /// 0008250 // oligosaccharyltransferase complex /// 0004579 // dolichyl-diphosphooligosaccharide-protein glycotransferase activity /// 0005792 // microsome /// 0042110 // T cell activation	29.306	"1,077"	659	823	29.306	29.306	17.374	"1,077"	883	"1,085"	17.374	17.374
ruditapes2_lrc2144	34.838	34.838	-34.838	-1.686	-2.47E-05	-1.675	-2.946	3.22E-03	0.061	1	histone h2a	/// 0005694 // chromosome	85.606	534	114	"1,192"	85.606	85.606	50.768	534	123	"1,572"	50.768	50.768
ruditapes2_lrc4425	13.811	13.811	-13.811	-1.686	-9.78E-06	-1.675	-1.855	0.064	0.605	1	ribosomal protein l21		33.931	564	1	499	33.931	33.931	20.12	564	1	658	20.12	20.12
ruditapes_s39096	91.977	91.977	-91.977	-1.685	-6.51E-05	-1.673	-4.783	1.73E-06	7.77E-05	0.056	40s ribosomal protein s3	/// 0015935 // small ribosomal subunit /// 0006412 // translation /// 0003723 // RNA binding /// 0003735 // structural constituent of ribosome /// 0009790 // embryonic development	226.341	316	500	"1,865"	226.341	226.341	134.364	316	348	"2,462"	134.364	134.364
ruditapes2_lrc3404	20.844	20.844	-20.844	-1.678	-1.48E-05	-1.666	-2.268	0.023	0.295	1	cytoplasmic actin	/// 0005524 // ATP binding /// 0005856 // cytoskeleton /// 0005515 // protein binding /// 0005737 // cytoplasm	51.601	411	138	553	51.601	51.601	30.757	411	225	733	30.757	30.757
ruditapes2_c3334	78.851	78.851	-78.851	-1.677	-5.58E-05	-1.666	-4.41	1.04E-05	3.97E-04	0.338	ribosomal protein l5	/// 0006414 // translational elongation /// 0005634 // nucleus /// 0005515 // protein binding /// 0022625 // cytosolic large ribosomal subunit /// 0006364 // rRNA processing /// 0003735 // structural constituent of ribosome /// 0008097 // 5S rRNA binding /// 0042273 // ribosomal large subunit biogenesis	195.335	985	233	"5,017"	195.335	195.335	116.483	985	305	"6,653"	116.483	116.483
ruditapes_lrc35398	38.737	38.737	-38.737	-1.672	-2.74E-05	-1.66	-3.081	2.06E-03	0.042	1	slc25a3-prov protein	/// 0006810 // transport /// 0005488 // binding /// 0015317 // phosphate:hydrogen symporter activity /// 0016021 // integral to membrane /// 0005743 // mitochondrial inner membrane	96.422	809	613	"2,034"	96.422	96.422	57.685	809	832	"2,706"	57.685	57.685
ruditapes_c408	165.298	165.298	-165.298	-1.669	-1.17E-04	-1.658	-6.358	2.05E-10	1.60E-08	6.68E-06	atp:adp antiporter	/// 0005488 // binding /// 0015865 // purine nucleotide transport /// 0005471 // ATP:ADP antiporter activity /// 0016021 // integral to membrane /// 0005743 // mitochondrial inner membrane /// 0009536 // plastid	412.21	"1,308"	854	"14,059"	412.21	412.21	246.912	"1,308"	"1,898"	"18,727"	246.912	246.912
ruditapes2_lrc5556	17.406	17.406	-17.406	-1.668	-1.23E-05	-1.657	-2.061	0.039	0.436	1	40s ribosomal protein s14	/// 0030529 // ribonucleoprotein complex	43.469	487	14	552	43.469	43.469	26.063	487	15	736	26.063	26.063
ruditapes2_lrc4923	121.183	121.183	-121.183	-1.667	-8.58E-05	-1.656	-5.435	5.47E-08	3.07E-06	1.78E-03	ribosomal protein l11	/// 0006414 // translational elongation /// 0006605 // protein targeting /// 0005730 // nucleolus /// 0005515 // protein binding /// 0005840 // ribosome /// 0006364 // rRNA processing /// 0005829 // cytosol /// 0042273 // ribosomal large subunit biogenesis	302.89	578	267	"4,565"	302.89	302.89	181.707	578	258	"6,090"	181.707	181.707
ruditapes_lrc34296	13.798	13.798	-13.798	-1.667	-9.77E-06	-1.656	-1.834	0.067	0.624	1	slc25a3-prov protein	/// 0006810 // transport /// 0005488 // binding /// 0015317 // phosphate:hydrogen symporter activity /// 0016021 // integral to membrane /// 0005743 // mitochondrial inner membrane	34.479	743	232	668	34.479	34.479	20.681	743	270	891	20.681	20.681
ruditapes_lrc32594	20.205	20.205	-20.205	-1.662	-1.43E-05	-1.651	-2.213	0.027	0.33	1	apextrin		50.729	852	102	"1,127"	50.729	50.729	30.524	852	147	"1,508"	30.524	30.524
ruditapes_c242	53.873	53.873	-53.873	-1.66	-3.81E-05	-1.649	-3.61	3.07E-04	8.28E-03	1	small ubiquitin-related modifier 3 precursor	/// 0019941 // modification-dependent protein catabolic process /// 0000776 // kinetochore /// 0005515 // protein binding /// 0005737 // cytoplasm /// 0006464 // protein modification process	135.479	"1,179"	"1,689"	"4,165"	135.479	135.479	81.606	"1,179"	"2,787"	"5,579"	81.606	81.606
ruditapes_lrc34372	101.241	101.241	-101.241	-1.656	-7.17E-05	-1.645	-4.936	7.98E-07	3.74E-05	0.026	ribosomal protein l7	/// 0015934 // large ribosomal subunit /// 0030528 // transcription regulator activity /// 0006412 // translation /// 0003735 // structural constituent of ribosome	255.622	789	241	"5,259"	255.622	255.622	154.381	789	351	"7,063"	154.381	154.381
ruditapes_lrc34197	232.992	232.992	-232.992	-1.651	-1.65E-04	-1.64	-7.469	8.06E-14	8.42E-12	2.63E-09	large subunit ribosomal protein 30	/// 0005840 // ribosome /// 0006412 // translation /// 0003735 // structural constituent of ribosome	590.625	579	137	"8,917"	590.625	590.625	357.633	579	218	"12,007"	357.633	357.633
ruditapes2_c5219	24.992	24.992	-24.992	-1.65	-1.77E-05	-1.639	-2.444	0.015	0.206	1	large subunit ribosomal protein 30	/// 0005840 // ribosome /// 0006412 // translation /// 0003735 // structural constituent of ribosome	63.444	405	5	670	63.444	63.444	38.452	405	7	903	38.452	38.452
ruditapes_c2959	26.971	26.971	-26.971	-1.649	-1.91E-05	-1.637	-2.537	0.011	0.169	1	glutathione peroxidase 3	/// 0005615 // extracellular space /// 0042744 // hydrogen peroxide catabolic process /// 0008430 // selenium binding /// 0008134 // transcription factor binding /// 0006982 // response to lipid hydroperoxide /// 0004602 // glutathione peroxidase activity /// 0051289 // protein homotetramerization	68.557	970	474	"1,734"	68.557	68.557	41.585	970	625	"2,339"	41.585	41.585
ruditapes2_lrc4098	426.826	426.826	-426.826	-1.648	-3.02E-04	-1.637	-10.089	6.21E-24	1.33E-21	2.03E-19	ribosomal protein s27a	/// 0031145 // anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process /// 0051436 // negative regulation of ubiquitin-protein ligase activity during mitotic cell cycle /// 0006414 // translational elongation /// 0046872 // metal ion binding /// 0051437 // positive regulation of ubiquitin-protein ligase activity during mitotic cell cycle /// 0005515 // protein binding /// 0005654 // nucleoplasm /// 0030433 // ER-associated protein catabolic process /// 0030528 // transcription regulator activity /// 0016567 // protein ubiquitination /// 0003735 // structural constituent of ribosome /// 0048167 // regulation of synaptic plasticity /// 0022627 // cytosolic small ribosomal subunit /// 0007411 // axon guidance /// 0045941 // positive regulation of transcription /// 0042062 // long-term strengthening of neuromuscular junction	"1,085.79"	519	"2,760"	"14,694"	"1,085.79"	"1,085.79"	658.96	519	"2,367"	"19,831"	658.96	658.96
ruditapes_lrc34463	22.198	22.198	-22.198	-1.647	-1.57E-05	-1.636	-2.299	0.022	0.277	1	ribosomal protein l35a	/// 0002119 // nematode larval development /// 0040010 // positive regulation of growth rate /// 0000003 // reproduction /// 0005840 // ribosome /// 0006412 // translation /// 0003735 // structural constituent of ribosome /// 0040017 // positive regulation of locomotion /// 0009792 // embryonic development ending in birth or egg hatching	56.526	422	109	622	56.526	56.526	34.328	422	67	840	34.328	34.328
ruditapes2_c587	"1,671.88"	"1,671.88"	"-1,671.88"	-1.645	-1.18E-03	-1.634	-19.951	1.51E-88	1.09E-85	4.91E-84	nadh dehydrogenase subunit 2	/// 0005739 // mitochondrion /// 0042773 // ATP synthesis coupled electron transport /// 0016491 // oxidoreductase activity	"4,264.86"	"1,293"	"127,778"	"143,791"	"4,264.86"	"4,264.86"	"2,592.99"	"1,293"	"183,530"	"194,409"	"2,592.99"	"2,592.99"
ruditapes2_c635	22.602	22.602	-22.602	-1.645	-1.60E-05	-1.634	-2.317	0.021	0.268	1	profilin	/// 0015629 // actin cytoskeleton /// 0003779 // actin binding /// 0005737 // cytoplasm /// 0030036 // actin cytoskeleton organization	57.655	"1,627"	788	"2,446"	57.655	57.655	35.053	"1,627"	"1,385"	"3,307"	35.053	35.053
ruditapes_lrc33919	13.361	13.361	-13.361	-1.643	-9.46E-06	-1.632	-1.779	0.075	0.678	1	40s ribosomal protein s20	/// 0015935 // small ribosomal subunit /// 0006412 // translation /// 0003723 // RNA binding /// 0003735 // structural constituent of ribosome	34.154	530	64	472	34.154	34.154	20.793	530	69	639	20.793	20.793
ruditapes_lrc38273	116.552	116.552	-116.552	-1.642	-8.25E-05	-1.631	-5.253	1.50E-07	7.84E-06	4.88E-03	ribosomal protein l32		298.055	469	473	"3,645"	298.055	298.055	181.503	469	615	"4,936"	181.503	181.503
ruditapes_lrc25552	16.02	16.02	-16.02	-1.64	-1.13E-05	-1.629	-1.945	0.052	0.527	1	cytochrome somatic	/// 0042981 // regulation of apoptosis /// 0022900 // electron transport chain /// 0044429 // mitochondrial part /// 0009055 // electron carrier activity /// 0005506 // iron ion binding	41.054	837	166	896	41.054	41.054	25.034	837	222	"1,215"	25.034	25.034
ruditapes2_lrc3339	19.759	19.759	-19.759	-1.631	-1.40E-05	-1.62	-2.147	0.032	0.374	1	ribosomal protein l11	/// 0006414 // translational elongation /// 0006605 // protein targeting /// 0005730 // nucleolus /// 0005515 // protein binding /// 0022625 // cytosolic large ribosomal subunit /// 0019843 // rRNA binding /// 0006364 // rRNA processing /// 0003735 // structural constituent of ribosome /// 0009790 // embryonic development /// 0042273 // ribosomal large subunit biogenesis	51.09	584	35	778	51.09	51.09	31.332	584	36	"1,061"	31.332	31.332
ruditapes2_c683	25.007	25.007	-25.007	-1.63	-1.77E-05	-1.619	-2.415	0.016	0.218	1	calmodulin	/// 0005524 // ATP binding /// 0042981 // regulation of apoptosis /// 0005516 // calmodulin binding /// 0005513 // detection of calcium ion /// 0043277 // apoptotic cell clearance /// 0030424 // axon /// 0019904 // protein domain specific binding /// 0031997 // N-terminal myristoylation domain binding /// 0051383 // kinetochore organization /// 0007268 // synaptic transmission /// 0040010 // positive regulation of growth rate /// 0008049 // male courtship behavior /// 0032036 // myosin heavy chain binding /// 0005634 // nucleus /// 0051533 // positive regulation of NFAT protein import into nucleus /// 0051726 // regulation of cell cycle /// 0006468 // protein amino acid phosphorylation /// 0048786 // presynaptic active zone /// 0005886 // plasma membrane /// 0045211 // postsynaptic membrane /// 0005876 // spindle microtubule /// 0031432 // titin binding /// 0051489 // regulation of filopodium assembly /// 0000922 // spindle pole /// 0016060 // metarhodopsin inactivation /// 0005829 // cytosol /// 0004721 // phosphoprotein phosphatase activity /// 0005813 // centrosome /// 0016062 // adaptation of rhodopsin mediated signaling /// 0008270 // zinc ion binding /// 0007528 // neuromuscular junction development /// 0005954 // calcium- and calmodulin-dependent protein kinase complex /// 0007616 // long-term memory /// 0005506 // iron ion binding /// 0004683 // calmodulin-dependent protein kinase activity /// 0005509 // calcium ion binding /// 0032465 // regulation of cytokinesis /// 0016061 // regulation of light-activated channel activity /// 0043388 // positive regulation of DNA binding /// 0016028 // rhabdomere /// 0016477 // cell migration /// 0030425 // dendrite /// 0009792 // embryonic development ending in birth or egg hatching /// 0007052 // mitotic spindle organization	64.693	923	"1,021"	"1,557"	64.693	64.693	39.686	923	"1,387"	"2,124"	39.686	39.686
ruditapes2_c138	21.304	21.304	-21.304	-1.627	-1.51E-05	-1.616	-2.225	0.026	0.322	1	protein		55.264	"1,331"	404	"1,918"	55.264	55.264	33.96	"1,331"	531	"2,621"	33.96	33.96
ruditapes_c2889	48.162	48.162	-48.162	-1.627	-3.41E-05	-1.616	-3.345	8.22E-04	0.019	1	ribosomal protein l7	/// 0015934 // large ribosomal subunit /// 0030528 // transcription regulator activity /// 0006412 // translation /// 0003735 // structural constituent of ribosome	124.957	755	167	"2,460"	124.957	124.957	76.795	755	211	"3,362"	76.795	76.795
ruditapes2_c3112	35.33	35.33	-35.33	-1.622	-2.50E-05	-1.611	-2.857	4.28E-03	0.077	1	mitochondrial atp synthase alpha subunit	"/// 0005524 // ATP binding /// 0005759 // mitochondrial matrix /// 0043499 // eukaryotic cell surface binding /// 0005811 // lipid particle /// 0002119 // nematode larval development /// 0040010 // positive regulation of growth rate /// 0000275 // mitochondrial proton-transporting ATP synthase complex,  catalytic core F(1) /// 0046933 // hydrogen ion transporting ATP synthase activity,  rotational mechanism /// 0005886 // plasma membrane /// 0015986 // ATP synthesis coupled proton transport /// 0006629 // lipid metabolic process /// 0046961 // proton-transporting ATPase activity,  rotational mechanism /// 0006911 // phagocytosis,  engulfment /// 0008340 // determination of adult lifespan /// 0007286 // spermatid development /// 0001937 // negative regulation of endothelial cell proliferation /// 0042288 // MHC class I protein binding /// 0009792 // embryonic development ending in birth or egg hatching /// 0008553 // hydrogen-exporting ATPase activity,  phosphorylative mechanism"	92.102	757	504	"1,818"	92.102	92.102	56.772	757	790	"2,492"	56.772	56.772
ruditapes_c2074	60.771	60.771	-60.771	-1.614	-4.30E-05	-1.603	-3.728	1.93E-04	5.56E-03	1	40s ribosomal protein s9	/// 0006414 // translational elongation /// 0008284 // positive regulation of cell proliferation /// 0005730 // nucleolus /// 0005515 // protein binding /// 0019843 // rRNA binding /// 0045182 // translation regulator activity /// 0003735 // structural constituent of ribosome /// 0022627 // cytosolic small ribosomal subunit	159.695	451	739	"1,878"	159.695	159.695	98.924	451	"1,104"	"2,587"	98.924	98.924
ruditapes2_lrc4221	44.965	44.965	-44.965	-1.612	-3.18E-05	-1.601	-3.202	1.37E-03	0.03	1	ubiquitin a-52 residue ribosomal protein fusion product 1	"/// 0031145 // anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process /// 0006355 // regulation of transcription,  DNA-dependent /// 0051436 // negative regulation of ubiquitin-protein ligase activity during mitotic cell cycle /// 0005811 // lipid particle /// 0006950 // response to stress /// 0006414 // translational elongation /// 0042254 // ribosome biogenesis /// 0051437 // positive regulation of ubiquitin-protein ligase activity during mitotic cell cycle /// 0005515 // protein binding /// 0005654 // nucleoplasm /// 0022625 // cytosolic large ribosomal subunit /// 0030433 // ER-associated protein catabolic process /// 0030528 // transcription regulator activity /// 0016567 // protein ubiquitination /// 0006325 // chromatin organization /// 0003735 // structural constituent of ribosome /// 0048167 // regulation of synaptic plasticity /// 0007411 // axon guidance /// 0045941 // positive regulation of transcription /// 0042062 // long-term strengthening of neuromuscular junction"	118.436	442	139	"1,365"	118.436	118.436	73.47	442	125	"1,883"	73.47	73.47
ruditapes2_c5587	99.08	99.08	-99.08	-1.609	-7.01E-05	-1.598	-4.743	2.10E-06	9.26E-05	0.069	60s ribosomal protein l23a	/// 0006414 // translational elongation /// 0005515 // protein binding /// 0022625 // cytosolic large ribosomal subunit /// 0019843 // rRNA binding /// 0000166 // nucleotide binding /// 0003735 // structural constituent of ribosome	261.772	551	426	"3,761"	261.772	261.772	162.692	551	474	"5,198"	162.692	162.692
ruditapes2_c185	32.807	32.807	-32.807	-1.6	-2.32E-05	-1.589	-2.713	6.66E-03	0.112	1	arginine kinase		87.487	"1,248"	"1,668"	"2,847"	87.487	87.487	54.681	"1,248"	"2,079"	"3,957"	54.681	54.681
ruditapes2_lrc5603	114.745	114.745	-114.745	-1.6	-8.12E-05	-1.589	-5.073	3.91E-07	1.92E-05	0.013	ribosomal protein l32	/// 0006414 // translational elongation /// 0005515 // protein binding /// 0022625 // cytosolic large ribosomal subunit	306.12	392	221	"3,129"	306.12	306.12	191.375	392	382	"4,350"	191.375	191.375
ruditapes2_c142	263.261	263.261	-263.261	-1.597	-1.86E-04	-1.586	-7.673	1.69E-14	1.89E-12	5.49E-10	40s ribosomal protein s23	/// 0015935 // small ribosomal subunit /// 0006412 // translation /// 0003735 // structural constituent of ribosome	704.185	492	"5,436"	"9,034"	704.185	704.185	440.923	492	"9,902"	"12,579"	440.923	440.923
ruditapes2_c1043	149.523	149.523	-149.523	-1.595	-1.06E-04	-1.584	-5.773	7.79E-09	5.11E-07	2.54E-04	ribosomal protein s6	/// 0048471 // perinuclear region of cytoplasm /// 0043066 // negative regulation of apoptosis /// 0006414 // translational elongation /// 0001890 // placenta development /// 0005730 // nucleolus /// 0043065 // positive regulation of apoptosis /// 0005515 // protein binding /// 0042274 // ribosomal small subunit biogenesis /// 0031575 // G1/S transition checkpoint /// 0031929 // TOR signaling pathway /// 0006924 // activation-induced cell death of T cells /// 0005844 // polysome /// 0006364 // rRNA processing /// 0000082 // G1/S transition of mitotic cell cycle /// 0002309 // T cell proliferation during immune response /// 0042593 // glucose homeostasis /// 0022605 // oogenesis stage /// 0003735 // structural constituent of ribosome /// 0022627 // cytosolic small ribosomal subunit /// 0033077 // T cell differentiation in the thymus /// 0007067 // mitosis /// 0007369 // gastrulation /// 0048821 // erythrocyte development	400.912	813	491	"8,499"	400.912	400.912	251.389	813	"1,210"	"11,851"	251.389	251.389
ruditapes2_lrc4878	97.525	97.525	-97.525	-1.592	-6.90E-05	-1.582	-4.654	3.25E-06	1.39E-04	0.106	40s ribosomal protein s14	/// 0005840 // ribosome /// 0006412 // translation /// 0003735 // structural constituent of ribosome	262.178	495	121	"3,384"	262.178	262.178	164.653	495	134	"4,726"	164.653	164.653
ruditapes_lrc32229	13.567	13.567	-13.567	-1.591	-9.59E-06	-1.58	-1.734	0.083	0.72	1	nascent polypeptide-associated complex subunit alpha	/// 0003713 // transcription coactivator activity /// 0006350 // transcription /// 0005634 // nucleus /// 0006412 // translation /// 0005854 // nascent polypeptide-associated complex /// 0016787 // hydrolase activity /// 0017025 // TATA-binding protein binding	36.522	734	24	699	36.522	36.522	22.955	734	38	977	22.955	22.955
ruditapes_c38334	68.489	68.489	-68.489	-1.591	-4.84E-05	-1.58	-3.897	9.74E-05	3.00E-03	1	ribosomal protein l35	/// 0006414 // translational elongation /// 0005730 // nucleolus /// 0005515 // protein binding /// 0003729 // mRNA binding /// 0022625 // cytosolic large ribosomal subunit /// 0003735 // structural constituent of ribosome	184.367	431	444	"2,072"	184.367	184.367	115.879	431	667	"2,896"	115.879	115.879
ruditapes2_c237	27.329	27.329	-27.329	-1.587	-1.93E-05	-1.576	-2.455	0.014	0.201	1	cofi_gibze ame: full=cofilin ame: full=actin-depolymerizing factor 1	/// 0044424 // intracellular part	73.893	"1,270"	"1,121"	"2,447"	73.893	73.893	46.564	"1,270"	"1,345"	"3,429"	46.564	46.564
ruditapes_lrc34753	139.469	139.469	-139.469	-1.583	-9.86E-05	-1.572	-5.531	3.19E-08	1.87E-06	1.04E-03	ribosomal protein s15	/// 0005840 // ribosome	378.73	530	842	"5,234"	378.73	378.73	239.26	530	732	"7,353"	239.26	239.26
ruditapes_lrc34295	26.978	26.978	-26.978	-1.578	-1.91E-05	-1.567	-2.424	0.015	0.214	1	ribosomal protein l18a	/// 0006414 // translational elongation /// 0030529 // ribonucleoprotein complex /// 0005515 // protein binding /// 0005829 // cytosol	73.652	327	2	628	73.652	73.652	46.674	327	1	885	46.674	46.674
ruditapes_c34961	56.955	56.955	-56.955	-1.571	-4.03E-05	-1.56	-3.504	4.58E-04	0.012	1	ribosomal protein l24	/// 0010458 // exit from mitosis /// 0006414 // translational elongation /// 0021554 // optic nerve development /// 0005515 // protein binding /// 0031575 // G1/S transition checkpoint /// 0022625 // cytosolic large ribosomal subunit /// 0031290 // retinal ganglion cell axon guidance /// 0000027 // ribosomal large subunit assembly /// 0060041 // retina development in camera-type eye /// 0003723 // RNA binding /// 0003735 // structural constituent of ribosome /// 0009790 // embryonic development	156.744	482	257	"1,970"	156.744	156.744	99.789	482	240	"2,789"	99.789	99.789
ruditapes_c15263	103.242	103.242	-103.242	-1.569	-7.30E-05	-1.559	-4.714	2.44E-06	1.06E-04	0.079	elongation factor-2		284.604	672	"4,925"	"4,987"	284.604	284.604	181.363	672	"6,876"	"7,067"	181.363	181.363
ruditapes2_lrc3718	176.203	176.203	-176.203	-1.563	-1.25E-04	-1.553	-6.132	8.68E-10	6.49E-08	2.83E-05	ferritin	/// 0006826 // iron ion transport /// 0016491 // oxidoreductase activity /// 0006879 // cellular iron ion homeostasis /// 0008199 // ferric iron binding	489.027	503	"2,541"	"6,414"	489.027	489.027	312.824	503	"2,783"	"9,124"	312.824	312.824
ruditapes2_lrc3972	14.98	14.98	-14.98	-1.557	-1.06E-05	-1.546	-1.779	0.075	0.677	1	beta 2b	/// 0005515 // protein binding /// 0000166 // nucleotide binding /// 0007017 // microtubule-based process	41.88	652	302	712	41.88	41.88	26.9	652	335	"1,017"	26.9	26.9
ruditapes2_c1559	40.556	40.556	-40.556	-1.554	-2.87E-05	-1.543	-2.921	3.49E-03	0.065	1	ependymin related protein-1 precursor		113.828	752	"2,232"	"2,232"	113.828	113.828	73.272	752	"3,195"	"3,195"	73.272	73.272
ruditapes_lrc23736	90.338	90.338	-90.338	-1.548	-6.38E-05	-1.537	-4.342	1.42E-05	5.26E-04	0.461	cg5499-pa	/// 0005811 // lipid particle /// 0005634 // nucleus /// 0006334 // nucleosome assembly /// 0003677 // DNA binding /// 0005700 // polytene chromosome /// 0000786 // nucleosome	255.223	829	39	"5,517"	255.223	255.223	164.885	829	82	"7,926"	164.885	164.885
ruditapes2_c3228	16.954	16.954	-16.954	-1.546	-1.20E-05	-1.535	-1.878	0.06	0.586	1	glutathione peroxidase 3	/// 0006749 // glutathione metabolic process /// 0005625 // soluble fraction /// 0005615 // extracellular space /// 0042744 // hydrogen peroxide catabolic process /// 0008430 // selenium binding /// 0008134 // transcription factor binding /// 0006982 // response to lipid hydroperoxide /// 0004602 // glutathione peroxidase activity /// 0051289 // protein homotetramerization /// 0043295 // glutathione binding	48.014	"1,131"	617	"1,416"	48.014	48.014	31.061	"1,131"	793	"2,037"	31.061	31.061
ruditapes2_c331	28.998	28.998	-28.998	-1.546	-2.05E-05	-1.536	-2.457	0.014	0.201	1	tgf beta-inducible nuclear protein 1		82.081	948	795	"2,029"	82.081	82.081	53.083	948	"1,202"	"2,918"	53.083	53.083
ruditapes2_c4432	13.443	13.443	-13.443	-1.544	-9.50E-06	-1.534	-1.67	0.095	0.783	1	slc25a3-prov protein	/// 0016020 // membrane	38.155	589	157	586	38.155	38.155	24.712	589	267	844	24.712	24.712
ruditapes2_lrc4116	35.825	35.825	-35.825	-1.54	-2.53E-05	-1.53	-2.718	6.57E-03	0.11	1	ribosomal protein s14e	/// 0005811 // lipid particle /// 0006412 // translation /// 0003735 // structural constituent of ribosome /// 0022627 // cytosolic small ribosomal subunit	102.164	613	45	"1,633"	102.164	102.164	66.338	613	61	"2,358"	66.338	66.338
ruditapes2_c3457	34.403	34.403	-34.403	-1.539	-2.43E-05	-1.529	-2.662	7.77E-03	0.127	1	activating transcription factor 4	/// 0016563 // transcription activator activity /// 0050811 // GABA receptor binding /// 0045944 // positive regulation of transcription from RNA polymerase II promoter /// 0003704 // specific RNA polymerase II transcription factor activity /// 0003677 // DNA binding /// 0005667 // transcription factor complex /// 0005737 // cytoplasm /// 0008022 // protein C-terminus binding /// 0006094 // gluconeogenesis	98.19	"1,467"	"1,109"	"3,756"	98.19	98.19	63.787	"1,467"	"1,666"	"5,426"	63.787	63.787
ruditapes_c2884	49.836	49.836	-49.836	-1.534	-3.52E-05	-1.523	-3.191	1.42E-03	0.031	1	alpha tubulin	/// 0005198 // structural molecule activity /// 0051258 // protein polymerization /// 0005525 // GTP binding /// 0003924 // GTPase activity /// 0043234 // protein complex /// 0005874 // microtubule /// 0007018 // microtubule-based movement	143.197	590	222	"2,203"	143.197	143.197	93.361	590	477	"3,194"	93.361	93.361
ruditapes_c31191	"6,707.47"	"6,707.47"	"-6,707.47"	-1.534	-4.74E-03	-1.524	-37.253	1.12E-303	1.83E-300	3.65E-299	nadh dehydrogenase subunit 4	/// 0005739 // mitochondrion /// 0016020 // membrane /// 0008137 // NADH dehydrogenase (ubiquinone) activity /// 0042773 // ATP synthesis coupled electron transport	"19,257.57"	624	"313,339"	"313,339"	"19,257.57"	"19,257.57"	"12,550.10"	624	"454,098"	"454,098"	"12,550.10"	"12,550.10"
ruditapes_lrc35365	104.165	104.165	-104.165	-1.533	-7.36E-05	-1.523	-4.61	4.02E-06	1.69E-04	0.131	60s ribosomal protein l9		299.573	647	777	"5,054"	299.573	299.573	195.407	647	752	"7,331"	195.407	195.407
ruditapes2_c244	49.118	49.118	-49.118	-1.525	-3.47E-05	-1.515	-3.146	1.66E-03	0.035	1	connective tissue growth factor		142.676	640	"2,267"	"2,381"	142.676	142.676	93.558	640	"3,233"	"3,472"	93.558	93.558
ruditapes2_lrc2178	47.507	47.507	-47.507	-1.524	-3.35E-05	-1.514	-3.091	1.99E-03	0.041	1	actin	/// 0030029 // actin filament-based process /// 0000910 // cytokinesis /// 0005488 // binding /// 0000003 // reproduction /// 0048513 // organ development /// 0009790 // embryonic development	138.184	814	258	"2,933"	138.184	138.184	90.678	814	398	"4,280"	90.678	90.678
ruditapes2_c101	20.165	20.165	-20.165	-1.516	-1.42E-05	-1.505	-2.001	0.045	0.48	1	high-mobility group box 3	/// 0007275 // multicellular organismal development	59.269	759	490	"1,173"	59.269	59.269	39.104	759	706	"1,721"	39.104	39.104
ruditapes2_c2172	15.347	15.347	-15.347	-1.513	-1.08E-05	-1.503	-1.742	0.081	0.712	1	hypothetical protein [Schistosoma mansoni]		45.239	540	637	637	45.239	45.239	29.893	540	936	936	29.893	29.893
ruditapes2_lrc5699	44.911	44.911	-44.911	-1.513	-3.17E-05	-1.503	-2.98	2.88E-03	0.056	1	ribosomal protein s5	/// 0006414 // translational elongation /// 0006413 // translational initiation /// 0003729 // mRNA binding /// 0006450 // regulation of translational fidelity /// 0003735 // structural constituent of ribosome /// 0022627 // cytosolic small ribosomal subunit	132.452	670	49	"2,314"	132.452	132.452	87.541	670	110	"3,401"	87.541	87.541
ruditapes2_c24	39.894	39.894	-39.894	-1.507	-2.82E-05	-1.497	-2.795	5.19E-03	0.09	1	tropomyosin		118.553	"2,497"	535	"7,719"	118.553	118.553	78.659	"2,497"	836	"11,389"	78.659	78.659
ruditapes_lrc32677	107.519	107.519	-107.519	-1.505	-7.59E-05	-1.495	-4.58	4.65E-06	1.94E-04	0.152	ribosomal protein s11	/// 0005840 // ribosome /// 0019843 // rRNA binding /// 0006412 // translation /// 0003735 // structural constituent of ribosome	320.553	530	120	"4,430"	320.553	320.553	213.034	530	129	"6,547"	213.034	213.034
ruditapes_lrc39605	65.031	65.031	-65.031	-1.498	-4.59E-05	-1.488	-3.542	3.98E-04	0.01	1	ribosomal protein s17	/// 0006414 // translational elongation /// 0034101 // erythrocyte homeostasis /// 0006413 // translational initiation /// 0042274 // ribosomal small subunit biogenesis /// 0006364 // rRNA processing /// 0003735 // structural constituent of ribosome /// 0022627 // cytosolic small ribosomal subunit	195.653	472	146	"2,408"	195.653	195.653	130.622	472	325	"3,575"	130.622	130.622
ruditapes_lrc36032	27.559	27.559	27.559	1.503	2.01E-05	1.513	2.391	0.017	0.23	1	nadh dehydrogenase subunit 1		54.832	719	651	"1,028"	54.832	54.832	82.391	719	"2,126"	"3,435"	82.391	82.391
ruditapes2_c1331	20.35	20.35	20.35	1.503	1.49E-05	1.513	2.054	0.04	0.44	1	ribosomal protein l12e	/// 0005811 // lipid particle /// 0030529 // ribonucleoprotein complex /// 0000022 // mitotic spindle elongation	40.492	394	3	416	40.492	40.492	60.842	394	12	"1,390"	60.842	60.842
ruditapes_lrc34958	16.845	16.845	16.845	1.509	1.23E-05	1.519	1.878	0.06	0.586	1	40s ribosomal protein s27	/// 0006414 // translational elongation /// 0008283 // cell proliferation /// 0005634 // nucleus /// 0005515 // protein binding /// 0003677 // DNA binding /// 0008270 // zinc ion binding /// 0003735 // structural constituent of ribosome /// 0022627 // cytosolic small ribosomal subunit	33.094	518	97	447	33.094	33.094	49.939	518	259	"1,500"	49.939	49.939
ruditapes_c226	240.448	240.448	240.448	1.545	1.75E-04	1.556	7.287	3.17E-13	3.22E-11	1.03E-08	ribosomal protein s2	/// 0006414 // translational elongation /// 0005730 // nucleolus /// 0005654 // nucleoplasm /// 0003723 // RNA binding /// 0048604 // fibroblast growth factor 3 binding /// 0003735 // structural constituent of ribosome /// 0022627 // cytosolic small ribosomal subunit /// 0048602 // fibroblast growth factor 1 binding	440.947	914	715	"10,509"	440.947	440.947	681.396	914	"2,404"	"36,113"	681.396	681.396
ruditapes_c5403	23.957	23.957	23.957	1.547	1.75E-05	1.557	2.302	0.021	0.275	1	zgc:172187 protein	/// 0032501 // multicellular organismal process /// 0043161 // proteasomal ubiquitin-dependent protein catabolic process /// 0005634 // nucleus /// 0048522 // positive regulation of cellular process /// 0051439 // regulation of ubiquitin-protein ligase activity during mitotic cell cycle /// 0005737 // cytoplasm /// 0006464 // protein modification process	43.829	490	475	560	43.829	43.829	67.786	490	"1,628"	"1,926"	67.786	67.786
ruditapes_lrc36809	13.53	13.53	13.53	1.558	9.86E-06	1.568	1.743	0.081	0.711	1	s9 ribosomal protein	/// 0015935 // small ribosomal subunit /// 0019843 // rRNA binding /// 0006412 // translation /// 0003735 // structural constituent of ribosome	24.266	501	53	317	24.266	24.266	37.796	501	165	"1,098"	37.796	37.796
ruditapes_c93	35.373	35.373	35.373	1.583	2.58E-05	1.593	2.865	4.17E-03	0.075	1	wnt1-inducible-signaling pathway protein 1 precursor (wisp-1) (wnt-1-induced secreted protein)		60.716	"1,046"	"1,656"	"1,656"	60.716	60.716	96.088	"1,046"	"5,828"	"5,828"	96.088	96.088
ruditapes2_c245	55.884	55.884	55.884	1.593	4.07E-05	1.604	3.625	2.89E-04	7.88E-03	1	ribosomal protein s4	/// 0007275 // multicellular organismal development /// 0006414 // translational elongation /// 0008284 // positive regulation of cell proliferation /// 0045727 // positive regulation of translation /// 0019843 // rRNA binding /// 0005844 // polysome /// 0003735 // structural constituent of ribosome /// 0022627 // cytosolic small ribosomal subunit	94.264	797	295	"1,959"	94.264	94.264	150.148	797	"1,141"	"6,939"	150.148	150.148
ruditapes_lrc33080	15.279	15.279	15.279	1.605	1.11E-05	1.616	1.91	0.056	0.559	1	tubulin alpha-1 chain	"/// 0005524 // ATP binding /// 0005198 // structural molecule activity /// 0051258 // protein polymerization /// 0005525 // GTP binding /// 0003924 // GTPase activity /// 0043234 // protein complex /// 0016021 // integral to membrane /// 0005874 // microtubule /// 0042626 // ATPase activity,  coupled to transmembrane movement of substances /// 0007018 // microtubule-based movement"	25.26	750	290	494	25.26	25.26	40.539	750	773	"1,763"	40.539	40.539
ruditapes_lrc8537	11.04	11.04	11.04	1.62	8.04E-06	1.631	1.638	0.101	0.813	1	cytochrome oxidase subunit 1		17.818	551	59	256	17.818	17.818	28.858	551	144	922	28.858	28.858
ruditapes2_c462	"4,435.23"	"4,435.23"	"4,435.23"	1.622	3.23E-03	1.633	32.99	0	0	0	cytochrome oxidase subunit 1	/// 0009060 // aerobic respiration /// 0006810 // transport /// 0022900 // electron transport chain /// 0005507 // copper ion binding /// 0004129 // cytochrome-c oxidase activity /// 0020037 // heme binding /// 0016021 // integral to membrane /// 0005743 // mitochondrial inner membrane /// 0009055 // electron carrier activity	"7,131.09"	"1,728"	"77,710"	"321,313"	"7,131.09"	"7,131.09"	"11,566.32"	"1,728"	"282,811"	"1,158,929"	"11,566.32"	"11,566.32"
ruditapes_lrc32583	59.307	59.307	59.307	1.634	4.32E-05	1.645	3.829	1.29E-04	3.87E-03	1	ribosomal protein s18	/// 0007275 // multicellular organismal development /// 0006414 // translational elongation /// 0051726 // regulation of cell cycle /// 0019843 // rRNA binding /// 0003735 // structural constituent of ribosome /// 0022627 // cytosolic small ribosomal subunit /// 0006417 // regulation of translation	93.507	518	33	"1,263"	93.507	93.507	152.815	518	77	"4,590"	152.815	152.815
ruditapes2_lrc4262	39.641	39.641	39.641	1.638	2.89E-05	1.649	3.137	1.71E-03	0.036	1	ribosomal protein s8	/// 0005840 // ribosome /// 0006412 // translation /// 0003735 // structural constituent of ribosome	62.129	779	138	"1,262"	62.129	62.129	101.77	779	554	"4,597"	101.77	101.77
ruditapes_lrc15460	172.241	172.241	172.241	1.662	1.25E-04	1.673	6.628	3.39E-11	2.85E-09	1.11E-06	elongation factor-1 alpha	/// 0006414 // translational elongation /// 0005525 // GTP binding /// 0003924 // GTPase activity /// 0005737 // cytoplasm /// 0003746 // translation elongation factor activity	260.259	585	"3,932"	"3,970"	260.259	260.259	432.5	585	"14,247"	"14,671"	432.5	432.5
ruditapes_lrc35863	11.276	11.276	11.276	1.698	8.20E-06	1.709	1.729	0.084	0.726	1	ribosomal protein l13a	/// 0015934 // large ribosomal subunit /// 0006412 // translation /// 0003735 // structural constituent of ribosome	16.157	667	67	281	16.157	16.157	27.433	667	169	"1,061"	27.433	27.433
ruditapes_lrc39310	24.841	24.841	24.841	1.719	1.81E-05	1.73	2.593	9.51E-03	0.149	1	atp:adp antiporter	/// 0044464 // cell part	34.559	799	138	720	34.559	34.559	59.4	799	561	"2,752"	59.4	59.4
ruditapes2_c5679	11.471	11.471	11.471	1.726	8.34E-06	1.737	1.768	0.077	0.687	1	ribosomal protein s15	/// 0005840 // ribosome	15.809	507	25	209	15.809	15.809	27.28	507	75	802	27.28	27.28
ruditapes2_c416	9.46	9.46	9.46	1.782	6.87E-06	1.794	1.648	0.099	0.802	1	actin	/// 0005524 // ATP binding /// 0005856 // cytoskeleton /// 0005515 // protein binding /// 0005737 // cytoplasm	12.105	"1,074"	26	339	12.105	12.105	21.565	"1,074"	248	"1,343"	21.565	21.565
ruditapes_lrc21103	61.732	61.732	61.732	1.783	4.48E-05	1.795	4.213	2.52E-05	8.84E-04	0.82	cytochrome oxidase subunit 1		78.867	478	428	983	78.867	78.867	140.6	478	"1,123"	"3,897"	140.6	140.6
ruditapes2_lrc3101	95.45	95.45	95.45	1.802	6.93E-05	1.814	5.283	1.27E-07	6.72E-06	4.15E-03	guanine nucleotide binding protein (g protein) beta polypeptide 2-like 1	/// 0005080 // protein kinase C binding /// 0007205 // activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway /// 0019903 // protein phosphatase binding /// 0005886 // plasma membrane /// 0043025 // cell soma /// 0005737 // cytoplasm /// 0005102 // receptor binding /// 0016301 // kinase activity /// 0004872 // receptor activity	119.08	"1,133"	642	"3,518"	119.08	119.08	214.529	"1,133"	"2,537"	"14,094"	214.529	214.529
ruditapes2_lrc3558	238.623	238.623	238.623	1.842	1.73E-04	1.855	8.498	0	0	0	ferritin	/// 0046914 // transition metal ion binding	283.324	539	544	"3,982"	283.324	283.324	521.948	539	"1,575"	"16,313"	521.948	521.948
ruditapes2_lrc5557	22.634	22.634	22.634	1.867	1.64E-05	1.879	2.643	8.23E-03	0.134	1	ribosomal protein l35a	/// 0006414 // translational elongation /// 0005515 // protein binding /// 0005840 // ribosome /// 0006364 // rRNA processing /// 0005829 // cytosol /// 0003735 // structural constituent of ribosome /// 0000049 // tRNA binding /// 0042273 // ribosomal large subunit biogenesis	26.113	398	19	271	26.113	26.113	48.747	398	91	"1,125"	48.747	48.747
ruditapes2_lrc5010	42.131	42.131	42.131	1.906	3.06E-05	1.919	3.66	2.52E-04	7.01E-03	1	ribosomal protein s16	/// 0005811 // lipid particle /// 0042254 // ribosome biogenesis /// 0005488 // binding /// 0015935 // small ribosomal subunit /// 0000022 // mitotic spindle elongation /// 0006412 // translation /// 0005829 // cytosol	46.494	518	1	628	46.494	46.494	88.626	518	3	"2,662"	88.626	88.626
ruditapes_c19045	70.858	70.858	70.858	1.916	5.14E-05	1.929	4.764	1.90E-06	8.49E-05	0.062	actin	/// 0005488 // binding /// 0005625 // soluble fraction /// 0005829 // cytosol /// 0030863 // cortical cytoskeleton	77.372	457	904	922	77.372	77.372	148.23	457	"3,695"	"3,928"	148.23	148.23
ruditapes_lrc38869	8.742	8.742	8.742	1.927	6.34E-06	1.94	1.68	0.093	0.774	1	beta 2b	/// 0005515 // protein binding	9.428	541	33	133	9.428	9.428	18.17	541	181	570	18.17	18.17
ruditapes_lrc38746	12.231	12.231	12.231	1.957	8.87E-06	1.97	2.008	0.045	0.476	1	tubulin alpha-1 chain	/// 0005198 // structural molecule activity /// 0051258 // protein polymerization /// 0005525 // GTP binding /// 0003924 // GTPase activity /// 0043234 // protein complex /// 0005874 // microtubule /// 0007018 // microtubule-based movement	12.784	333	85	111	12.784	12.784	25.014	333	269	483	25.014	25.014
ruditapes_lrc33024	15.893	15.893	15.893	1.98	1.15E-05	1.993	2.307	0.021	0.273	1	ribosomal protein l17	/// 0006414 // translational elongation /// 0015934 // large ribosomal subunit /// 0005829 // cytosol /// 0003735 // structural constituent of ribosome	16.223	617	27	261	16.223	16.223	32.116	617	89	"1,149"	32.116	32.116
ruditapes_lrc32728	12.672	12.672	12.672	2.011	9.19E-06	2.024	2.081	0.037	0.421	1	laminin receptor 1	/// 0034961 // cellular biopolymer biosynthetic process /// 0005624 // membrane fraction /// 0043236 // laminin binding /// 0044238 // primary metabolic process /// 0005840 // ribosome /// 0010467 // gene expression	12.54	578	25	189	12.54	12.54	25.212	578	90	845	25.212	25.212
ruditapes_lrc33287	17.301	17.301	17.301	2.036	1.25E-05	2.05	2.451	0.014	0.203	1	ubiquitin a-52 residue ribosomal protein fusion product 1	/// 0005840 // ribosome /// 0006412 // translation /// 0003735 // structural constituent of ribosome /// 0006464 // protein modification process	16.7	457	5	199	16.7	16.7	34.001	457	31	901	34.001	34.001
ruditapes2_lrc5734	139.701	139.701	139.701	2.099	1.01E-04	2.113	7.097	1.27E-12	1.20E-10	4.14E-08	ribosomal protein s24	/// 0005811 // lipid particle /// 0003735 // structural constituent of ribosome /// 0022627 // cytosolic small ribosomal subunit	127.138	495	171	"1,641"	127.138	127.138	266.839	495	360	"7,659"	266.839	266.839
ruditapes2_lrc5631	19.212	19.212	19.212	2.114	1.39E-05	2.128	2.643	8.21E-03	0.134	1	40s ribosomal protein s10	/// 0005840 // ribosome	17.248	587	27	264	17.248	17.248	36.46	587	138	"1,241"	36.46	36.46
ruditapes2_lrc4151	8.563	8.563	8.563	2.219	6.20E-06	2.234	1.814	0.07	0.643	1	basic transcription factor 3-like 4		7.027	906	0	166	7.027	7.027	15.59	906	13	819	15.59	15.59
ruditapes_c25365	38.233	38.233	38.233	2.239	2.77E-05	2.254	3.853	1.17E-04	3.55E-03	1	tubulin alpha-1 chain	/// 0005198 // structural molecule activity /// 0051258 // protein polymerization /// 0005525 // GTP binding /// 0003924 // GTPase activity /// 0043234 // protein complex /// 0005874 // microtubule /// 0007018 // microtubule-based movement	30.861	466	375	375	30.861	30.861	69.094	466	"1,867"	"1,867"	69.094	69.094
ruditapes_c6314	"1,729.78"	"1,729.78"	"1,729.78"	2.265	1.25E-03	2.281	26.106	0	0	0	cytochrome b	/// 0006810 // transport /// 0005739 // mitochondrion /// 0016491 // oxidoreductase activity /// 0016021 // integral to membrane /// 0009055 // electron carrier activity /// 0005506 // iron ion binding /// 0022904 // respiratory electron transport chain	"1,367.12"	574	"11,988"	"20,462"	"1,367.12"	"1,367.12"	"3,096.90"	574	"64,560"	"103,076"	"3,096.90"	"3,096.90"
ruditapes2_lrc3864	10.963	10.963	10.963	2.266	7.94E-06	2.282	2.077	0.038	0.423	1	tropomyosin		8.657	886	80	200	8.657	8.657	19.62	886	283	"1,008"	19.62	19.62
ruditapes_lrc35570	10.171	10.171	10.171	2.277	7.36E-06	2.293	2.006	0.045	0.477	1	laminin receptor 1	/// 0005624 // membrane fraction /// 0043236 // laminin binding /// 0015935 // small ribosomal subunit /// 0006412 // translation /// 0003735 // structural constituent of ribosome /// 0004872 // receptor activity	7.963	602	17	125	7.963	7.963	18.134	602	82	633	18.134	18.134
ruditapes2_lrc4546	9.451	9.451	9.451	2.297	6.84E-06	2.312	1.942	0.052	0.53	1	histone	/// 0002119 // nematode larval development /// 0040010 // positive regulation of growth rate /// 0001740 // Barr body /// 0006334 // nucleosome assembly /// 0003677 // DNA binding /// 0010171 // body morphogenesis /// 0007155 // cell adhesion /// 0008360 // regulation of cell shape /// 0009792 // embryonic development ending in birth or egg hatching /// 0000786 // nucleosome	7.289	784	4	149	7.289	7.289	16.74	784	43	761	16.74	16.74
ruditapes2_c215	8.709	8.709	8.709	2.347	6.30E-06	2.363	1.885	0.059	0.58	1	60s acidic ribosomal protein p2	/// 0006414 // translational elongation /// 0005840 // ribosome /// 0003735 // structural constituent of ribosome	6.466	433	4	73	6.466	6.466	15.175	433	7	381	15.175	15.175
ruditapes_lrc35449	24.387	24.387	24.387	2.377	1.77E-05	2.393	3.175	1.50E-03	0.032	1	ribosomal protein l8	/// 0006414 // translational elongation /// 0022625 // cytosolic large ribosomal subunit /// 0019843 // rRNA binding /// 0003735 // structural constituent of ribosome	17.708	719	31	332	17.708	17.708	42.095	719	86	"1,755"	42.095	42.095
ruditapes_lrc35096	16.421	16.421	16.421	2.426	1.19E-05	2.443	2.632	8.49E-03	0.136	1	apextrin		11.512	"1,086"	44	326	11.512	11.512	27.933	"1,086"	317	"1,759"	27.933	27.933
ruditapes_c24684	6.506	6.506	6.506	2.444	4.71E-06	2.46	1.662	0.096	0.788	1	protein		4.507	451	53	53	4.507	4.507	11.013	451	287	288	11.013	11.013
ruditapes2_c5684	21.893	21.893	21.893	2.448	1.58E-05	2.465	3.052	2.27E-03	0.046	1	60s acidic ribosomal protein p1	/// 0006414 // translational elongation /// 0005840 // ribosome /// 0003735 // structural constituent of ribosome	15.12	383	8	151	15.12	15.12	37.013	383	20	822	37.013	37.013
ruditapes2_c4794	212.514	212.514	212.514	2.589	1.54E-04	2.607	9.761	0	0	0	ribosomal protein s12	/// 0006414 // translational elongation /// 0005739 // mitochondrion /// 0003735 // structural constituent of ribosome /// 0022627 // cytosolic small ribosomal subunit	133.733	466	148	"1,625"	133.733	133.733	346.247	466	619	"9,356"	346.247	346.247
ruditapes_c9171	9.856	9.856	9.856	2.603	7.13E-06	2.621	2.107	0.035	0.403	1	cathepsin b precursor	/// 0006508 // proteolysis /// 0004197 // cysteine-type endopeptidase activity	6.147	680	109	109	6.147	6.147	16.003	680	631	631	16.003	16.003
ruditapes_lrc34660	29.903	29.903	29.903	2.621	2.16E-05	2.639	3.681	2.32E-04	6.49E-03	1	60s ribosomal protein l13a	/// 0015934 // large ribosomal subunit /// 0006412 // translation /// 0003735 // structural constituent of ribosome	18.442	549	117	264	18.442	18.442	48.345	549	528	"1,539"	48.345	48.345
ruditapes_lrc27510	13.196	13.196	13.196	2.688	9.54E-06	2.707	2.472	0.013	0.193	1	cytochrome oxidase subunit 1	/// 0046914 // transition metal ion binding /// 0016020 // membrane /// 0008152 // metabolic process	7.815	687	53	140	7.815	7.815	21.011	687	230	837	21.011	21.011
ruditapes_lrc34108	5.697	5.697	5.697	2.716	4.12E-06	2.735	1.631	0.103	0.821	1	beta isoform cra_a		3.319	855	0	74	3.319	3.319	9.016	855	6	447	9.016	9.016
ruditapes_lrc32780	8.242	8.242	8.242	2.765	5.96E-06	2.784	1.977	0.048	0.5	1	h+ transporting f1 atp synthase epsilon subunit	"/// 0000275 // mitochondrial proton-transporting ATP synthase complex,  catalytic core F(1) /// 0046933 // hydrogen ion transporting ATP synthase activity,  rotational mechanism /// 0015986 // ATP synthesis coupled proton transport /// 0046961 // proton-transporting ATPase activity,  rotational mechanism"	4.67	386	0	47	4.67	4.67	12.912	386	13	289	12.912	12.912
ruditapes_lrc36885	10.82	10.82	10.82	2.855	7.82E-06	2.874	2.294	0.022	0.28	1	ribosomal protein s5	/// 0006414 // translational elongation /// 0006413 // translational initiation /// 0003729 // mRNA binding /// 0006450 // regulation of translational fidelity /// 0003735 // structural constituent of ribosome /// 0022627 // cytosolic small ribosomal subunit	5.832	697	0	106	5.832	5.832	16.652	697	18	673	16.652	16.652
ruditapes_lrc34349	10.884	10.884	10.884	3.051	7.86E-06	3.072	2.359	0.018	0.246	1	ribosomal protein l14	/// 0030529 // ribonucleoprotein complex	5.305	506	0	70	5.305	5.305	16.189	506	8	475	16.189	16.189
ruditapes_c1671	10.837	10.837	10.837	3.185	7.83E-06	3.207	2.39	0.017	0.23	1	translationally controlled tumor protein	/// 0007275 // multicellular organismal development /// 0040007 // growth /// 0005488 // binding	4.959	464	0	60	4.959	4.959	15.796	464	13	425	15.796	15.796
ruditapes_lrc34207	16.558	16.558	16.558	3.228	1.20E-05	3.25	2.968	3.00E-03	0.058	1	ribosomal protein l8	/// 0006414 // translational elongation /// 0022625 // cytosolic large ribosomal subunit /// 0019843 // rRNA binding /// 0003735 // structural constituent of ribosome	7.431	578	4	112	7.431	7.431	23.989	578	47	804	23.989	23.989
ruditapes_lrc33543	6.344	6.344	6.344	3.238	4.58E-06	3.26	1.839	0.066	0.62	1	atp:adp antiporter	/// 0006839 // mitochondrial transport /// 0005488 // binding /// 0015865 // purine nucleotide transport /// 0005471 // ATP:ADP antiporter activity /// 0016021 // integral to membrane /// 0005743 // mitochondrial inner membrane /// 0009536 // plastid	2.835	744	0	55	2.835	2.835	9.179	744	3	396	9.179	9.179
ruditapes_lrc35066	5.838	5.838	5.838	3.245	4.22E-06	3.267	1.765	0.078	0.689	1	GF24496 [Drosophila ananassae]		2.6	885	6	60	2.6	2.6	8.438	885	53	433	8.438	8.438
ruditapes2_c1075	17.02	17.02	17.02	3.277	1.23E-05	3.299	3.024	2.50E-03	0.05	1	b-cell translocation gene 1		7.476	949	28	185	7.476	7.476	24.497	949	209	"1,348"	24.497	24.497
ruditapes_lrc38572	7.815	7.815	7.815	3.373	5.64E-06	3.396	2.068	0.039	0.43	1	ribosomal protein s18	/// 0007275 // multicellular organismal development /// 0006414 // translational elongation /// 0051726 // regulation of cell cycle /// 0019843 // rRNA binding /// 0003735 // structural constituent of ribosome /// 0022627 // cytosolic small ribosomal subunit /// 0006417 // regulation of translation	3.294	489	0	42	3.294	3.294	11.109	489	3	315	11.109	11.109
ruditapes2_c19	6.825	6.825	6.825	3.451	4.93E-06	3.475	1.947	0.052	0.525	1	40s ribosomal protein s2	/// 0006414 // translational elongation /// 0005730 // nucleolus /// 0005654 // nucleoplasm /// 0003723 // RNA binding /// 0048604 // fibroblast growth factor 3 binding /// 0003735 // structural constituent of ribosome /// 0022627 // cytosolic small ribosomal subunit /// 0048602 // fibroblast growth factor 1 binding	2.784	551	2	40	2.784	2.784	9.609	551	21	307	9.609	9.609
ruditapes_lrc35347	8.983	8.983	8.983	3.554	6.49E-06	3.578	2.254	0.024	0.304	1	ribosomal protein s19	/// 0030529 // ribonucleoprotein complex	3.518	447	1	41	3.518	3.518	12.5	447	10	324	12.5	12.5
ruditapes_lrc32456	13.727	13.727	13.727	3.566	9.91E-06	3.59	2.789	5.29E-03	0.092	1	ribosomal protein l9	/// 0030529 // ribonucleoprotein complex	5.35	810	0	113	5.35	5.35	19.077	810	2	896	19.077	19.077
ruditapes_lrc31623	8.516	8.516	8.516	3.897	6.15E-06	3.924	2.253	0.024	0.305	1	cytochrome oxidase subunit 1	/// 0044237 // cellular metabolic process /// 0046872 // metal ion binding /// 0003824 // catalytic activity /// 0044464 // cell part	2.939	548	22	42	2.939	2.939	11.455	548	165	364	11.455	11.455
ruditapes_lrc28453	33.747	33.747	33.747	4.007	2.44E-05	4.034	4.518	6.24E-06	2.52E-04	0.203	ferritin	/// 0005488 // binding	11.223	762	138	223	11.223	11.223	44.97	762	939	"1,987"	44.97	44.97
ruditapes2_lrc5592	5.156	5.156	5.156	4.025	3.72E-06	4.052	1.768	0.077	0.687	1	kda midgut partial		1.704	450	0	20	1.704	1.704	6.86	450	7	179	6.86	6.86
ruditapes_lrc34458	22.261	22.261	22.261	4.336	1.61E-05	4.365	3.743	1.82E-04	5.27E-03	1	basic transcription factor 3-like 4		6.673	931	0	162	6.673	6.673	28.934	931	25	"1,562"	28.934	28.934
ruditapes_lrc33519	7.331	7.331	7.331	4.422	5.29E-06	4.452	2.158	0.031	0.367	1	ribosomal protein s24	/// 0030529 // ribonucleoprotein complex	2.142	537	1	30	2.142	2.142	9.474	537	7	295	9.474	9.474
ruditapes_lrc33766	21.549	21.549	21.549	4.474	1.56E-05	4.504	3.71	2.08E-04	5.91E-03	1	ribosomal protein l27	/// 0006414 // translational elongation /// 0005840 // ribosome /// 0005829 // cytosol /// 0003735 // structural constituent of ribosome	6.204	476	0	77	6.204	6.204	27.753	476	17	766	27.753	27.753
ruditapes2_c4916	11.968	11.968	11.968	4.614	8.64E-06	4.645	2.784	5.37E-03	0.093	1	large subunit ribosomal protein 30	/// 0005840 // ribosome /// 0006412 // translation /// 0003735 // structural constituent of ribosome	3.312	579	0	50	3.312	3.312	15.28	579	12	513	15.28	15.28
ruditapes2_lrc4084	6.307	6.307	6.307	4.633	4.55E-06	4.665	2.023	0.043	0.463	1	galactoside- 8	/// 0005634 // nucleus /// 0005515 // protein binding /// 0030198 // extracellular matrix organization /// 0001501 // skeletal system development /// 0005737 // cytoplasm /// 0005578 // proteinaceous extracellular matrix	1.736	729	0	33	1.736	1.736	8.043	729	34	340	8.043	8.043
ruditapes2_c356	5.678	5.678	5.678	4.663	4.10E-06	4.694	1.922	0.055	0.547	1	ppig protein	/// 0005634 // nucleus	1.55	470	19	19	1.55	1.55	7.229	470	194	197	7.229	7.229
ruditapes_lrc16378	34.307	34.307	34.307	4.713	2.48E-05	4.745	4.736	2.18E-06	9.54E-05	0.071	ubiquitin family protein	/// 0031145 // anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process /// 0051436 // negative regulation of ubiquitin-protein ligase activity during mitotic cell cycle /// 0051437 // positive regulation of ubiquitin-protein ligase activity during mitotic cell cycle /// 0005654 // nucleoplasm /// 0030528 // transcription regulator activity /// 0016567 // protein ubiquitination /// 0005829 // cytosol /// 0045941 // positive regulation of transcription	9.239	440	52	106	9.239	9.239	43.546	440	252	"1,111"	43.546	43.546
ruditapes2_c10	49.936	49.936	49.936	4.743	3.60E-05	4.775	5.722	1.05E-08	6.80E-07	3.44E-04	ribosomal protein s24	/// 0005840 // ribosome	13.342	526	12	183	13.342	13.342	63.278	526	67	"1,930"	63.278	63.278
ruditapes_lrc32178	13.197	13.197	13.197	4.874	9.52E-06	4.907	2.959	3.09E-03	0.059	1	atp synthase beta	"/// 0005524 // ATP binding /// 0005811 // lipid particle /// 0000275 // mitochondrial proton-transporting ATP synthase complex,  catalytic core F(1) /// 0046933 // hydrogen ion transporting ATP synthase activity,  rotational mechanism /// 0015986 // ATP synthesis coupled proton transport /// 0046961 // proton-transporting ATPase activity,  rotational mechanism /// 0008553 // hydrogen-exporting ATPase activity,  phosphorylative mechanism"	3.406	698	3	62	3.406	3.406	16.603	698	77	672	16.603	16.603
ruditapes2_c1383	12.476	12.476	12.476	4.954	9.00E-06	4.988	2.887	3.89E-03	0.072	1	actin	/// 0005524 // ATP binding /// 0005856 // cytoskeleton /// 0005515 // protein binding /// 0005737 // cytoplasm	3.155	705	4	58	3.155	3.155	15.631	705	57	639	15.631	15.631
ruditapes_lrc33999	28.762	28.762	28.762	4.996	2.08E-05	5.03	4.39	1.13E-05	4.31E-04	0.369	40s ribosomal protein s10	/// 0005840 // ribosome	7.198	634	28	119	7.198	7.198	35.96	634	216	"1,322"	35.96	35.96
ruditapes2_c3418	5.888	5.888	5.888	5.272	4.25E-06	5.308	2.008	0.045	0.476	1	atp:adp antiporter	/// 0006810 // transport /// 0005215 // transporter activity /// 0005488 // binding /// 0016021 // integral to membrane /// 0005743 // mitochondrial inner membrane	1.378	807	0	29	1.378	1.378	7.266	807	4	340	7.266	7.266
ruditapes_s38966	4.795	4.795	4.795	5.576	3.46E-06	5.614	1.831	0.067	0.626	1	elongation factor 1-beta	/// 0006414 // translational elongation /// 0005853 // eukaryotic translation elongation factor 1 complex /// 0003746 // translation elongation factor activity	1.048	366	0	10	1.048	1.048	5.843	366	15	124	5.843	5.843
ruditapes_s36301	4.8	4.8	4.8	5.808	3.46E-06	5.848	1.846	0.065	0.614	1	ribosomal protein s19e	/// 0030529 // ribonucleoprotein complex	0.998	461	0	12	0.998	0.998	5.798	461	12	155	5.798	5.798
ruditapes2_c3321	9.39	9.39	9.39	5.958	6.77E-06	5.999	2.593	9.52E-03	0.149	1	AF339450_1hillarin [Hirudo medicinalis]		1.894	"1,134"	4	56	1.894	1.894	11.284	"1,134"	39	742	11.284	11.284
ruditapes_lrc6892	4.01	4.01	4.01	5.974	2.89E-06	6.015	1.695	0.09	0.759	1	cytochrome c oxidase subunit viic		0.806	666	0	14	0.806	0.806	4.816	666	6	186	4.816	4.816
ruditapes_c703	"16,596.14"	"16,596.14"	"16,596.14"	6.474	0.012	6.518	111.186	0	0	0	structural polyprotein		"3,031.72"	872	"68,934"	"68,934"	"3,031.72"	"3,031.72"	"19,627.86"	872	"992,447"	"992,447"	"19,627.86"	"19,627.86"
ruditapes2_lrc4303	10.47	10.47	10.47	6.901	7.55E-06	6.948	2.802	5.08E-03	0.089	1	mitochondrial cytochrome c oxidase subunit 6b	/// 0005751 // mitochondrial respiratory chain complex IV	1.774	562	2	26	1.774	1.774	12.244	562	101	399	12.244	12.244
ruditapes_lrc32372	3.499	3.499	3.499	7.78	2.52E-06	7.832	1.647	0.1	0.804	1	galactoside- 3	/// 0005634 // nucleus /// 0005488 // binding /// 0005737 // cytoplasm	0.516	743	0	10	0.516	0.516	4.015	743	31	173	4.015	4.015
ruditapes2_lrc5155	19.813	19.813	19.813	8.056	1.43E-05	8.111	3.936	8.29E-05	2.60E-03	1	ribosomal protein l14	/// 0030529 // ribonucleoprotein complex	2.808	478	0	35	2.808	2.808	22.622	478	17	627	22.622	22.622
ruditapes2_c11	6.151	6.151	6.151	8.26	4.43E-06	8.316	2.2	0.028	0.339	1	ubiquitin-conjugating enzyme e2d 3 (ubc4 5 yeast) isoform cra_a	/// 0040007 // growth /// 0002119 // nematode larval development /// 0030509 // BMP signaling pathway /// 0051246 // regulation of protein metabolic process /// 0043161 // proteasomal ubiquitin-dependent protein catabolic process /// 0031625 // ubiquitin protein ligase binding /// 0051276 // chromosome organization /// 0048477 // oogenesis /// 0008340 // determination of adult lifespan /// 0007140 // male meiosis /// 0040011 // locomotion /// 0016567 // protein ubiquitination /// 0040035 // hermaphrodite genitalia development /// 0007286 // spermatid development /// 0045676 // regulation of R7 cell differentiation /// 0004842 // ubiquitin-protein ligase activity /// 0007067 // mitosis /// 0009792 // embryonic development ending in birth or egg hatching	0.847	860	1	19	0.847	0.847	6.999	860	30	349	6.999	6.999
ruditapes_lrc33015	8.107	8.107	8.107	8.619	5.84E-06	8.678	2.538	0.011	0.169	1	ribosomal protein l8	/// 0005840 // ribosome /// 0006412 // translation /// 0003735 // structural constituent of ribosome	1.064	865	0	24	1.064	1.064	9.171	865	22	460	9.171	9.171
ruditapes_lrc34048	22.117	22.117	22.117	8.896	1.59E-05	8.956	4.207	2.58E-05	9.04E-04	0.843	mitochondrial atp synthase lipid binding protein precursor	"/// 0015992 // proton transport /// 0015078 // hydrogen ion transmembrane transporter activity /// 0045263 // proton-transporting ATP synthase complex,  coupling factor F(o)"	2.801	753	0	55	2.801	2.801	24.918	753	38	"1,088"	24.918	24.918
ruditapes_c3889	3.982	3.982	3.982	9.547	2.87E-06	9.612	1.799	0.072	0.658	1	lethal neo18		0.466	"1,070"	0	13	0.466	0.466	4.448	"1,070"	33	276	4.448	4.448
ruditapes2_c5501	8.543	8.543	8.543	9.607	6.16E-06	9.672	2.637	8.37E-03	0.135	1	60s acidic ribosomal protein p1	/// 0006414 // translational elongation /// 0005840 // ribosome /// 0003735 // structural constituent of ribosome	0.993	425	0	11	0.993	0.993	9.536	425	7	235	9.536	9.536
ruditapes_c3253	4.925	4.925	4.925	9.743	3.55E-06	9.809	2.005	0.045	0.477	1	nadh dehydrogenase 1 beta 19kda		0.563	817	0	12	0.563	0.563	5.488	817	24	260	5.488	5.488
ruditapes_lrc34668	71.693	71.693	71.693	9.789	5.17E-05	9.856	7.653	1.95E-14	2.17E-12	6.37E-10	basic transcription factor 3-like 4		8.157	630	10	134	8.157	8.157	79.851	630	122	"2,917"	79.851	79.851
ruditapes_c36135	5.429	5.429	5.429	11.617	3.91E-06	11.696	2.14	0.032	0.38	1	a chain structural consequences of accommodation of four non- cognate amino-acid residues in the s1 pocket of bovine trypsin and chymotrypsin	/// 0016787 // hydrolase activity	0.511	450	4	6	0.511	0.511	5.94	450	94	155	5.94	5.94
ruditapes_lrc31415	2.683	2.683	2.683	?	1.93E-06	?	1.638	0.101	0.813	1	ribosomal protein s24	/// 0006414 // translational elongation /// 0005634 // nucleus /// 0034101 // erythrocyte homeostasis /// 0005488 // binding /// 0042274 // ribosomal small subunit biogenesis /// 0006364 // rRNA processing /// 0003735 // structural constituent of ribosome /// 0022627 // cytosolic small ribosomal subunit	0	527	0	0	0	0	2.683	527	7	82	2.683	2.683